Tympanuchus pallidicinctus (lesser prairie-chicken): 128078073
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Entry
128078073 CDS
T08967
Symbol
COL17A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128078073 (COL17A1)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
128078073
NCBI-ProteinID:
XP_052533887
LinkDB
All DBs
Position
Unknown
AA seq
1591 aa
AA seq
DB search
MKSRSVKGWRKEEKKKLLPASLPITFPCVSNPANENLAPEVGGGNDMDSLTKKTRQDGSE
VTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGVEKRSYTHSSGYVTSSGSGRLNS
SSSGYRQTQSPSSTLTKSPGSTFERKTHVNRHATYEGSSSANSSPEFPRKEFASASTRGR
SQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSASCSPTRSSSSTLPIPKKAVVETK
MVTESSQSVSGTYDTTILNTALPPYTWSSTLPAGSSLGGYHNSMGQSSSLVNAMSHSTGS
VFGVPNNLAPSSHTLNTGLSTSSTVFGVQNNLSPSSSALNATAASAAYGMKNTSQTNTMN
STGVSASAGGTVLSSQGDDFLRKDCKFLLLEKENAPAKKEMELLVMTKDSGKVFSASSTG
LNGGSFAEDTLKKEKQGLSSYVADTGLKSDTNGGLKSAPTRDKATYAEIRNGDAGGAIGS
APSWCPCGSCCSWWKWLLGLLLAWLLLLGLLFGLIALAEEVRKLRSRVDNLEKINHSFLT
VNQGNPYLEKDVSKVDFLHGAAPSSTFPFENEESVWLMVKSRLNKEIERGYFRGERGEPG
MKGDMGLQGPKGDRGLPGVPGIPGPAGHQGPEGPKGQKGSMGDPGMEGPMGQRGREGLPG
PRGEPGPPGFGEKGDRGAAGPPGPPGPPGSAGLKGPMGSPGPQGPPGPPGLQGFRGEAGL
PGAKGEKGATGSPGPKGDQGEKGARGMTGEQGSRGIPGPPGEPGAKGPAGQAGRDGQPGE
KGEPGLMGMPGARGPPGPSGDAGEPGLTGPQGPPGLPGNPGRPGAKGEPGSPGKVISAEG
SSTIALPGPPGPPGPMGPTGPPGVPGPIGPAGLPGQQGPRGEKGSAGEAVIETIRTEVSS
LASQMLGDIQGRAGPPGPPGPPGESVQGLPGPRGPPGLPGPSGPPGRPGSSVSTSETFVS
GPPGPPGPPGPKGDQGERGPRGFTGEPGEPGLPGFSSHGGTVTMQGPPGPPGPPGPKGDA
GVPGAPGIPGTSRGGSRQIQGPPGPPGPPGPPGPGGSSSQEIQHYVADYLKSDNIRHYLT
GAQGPPGPPGPPGILTTADGKSFDFAELATRVMSYMTSSSDHYQSFASSVSTTSVLYQEL
LNLLQREEIRQYLVGPRGPPGPPGPGVDGMSLSLDYDELTRRFISYLTSSGMSIGLPGPP
GPPGSPGISYSELTAYLRNSEFSGLVGPPGPAGPPGPPGIPGSSGTSLEDISAYLQSVGY
SSISGMQGPPGPPGPPGPPGFSGTGLLSYADITHSDEFRSELIQYLKSDEVRSYISGPPG
PPGPRGPPGPKGDSGLVAGSMSSLYHDSLASERSHGGSMGAEGSHGGSLGTGSSYSSSMS
SSRSSYSASMGNDGSYGASLGSDGSFDGLLTAEESHRRSAGPGRSYSNSFTGSLDYSELA
RRVSENLQSQGILQDFMSYTGQGPPGPPGPPGPPGISRVFAAYGNVTEDLMDFFRTHGTV
RGPPGEKGERGYPGPKGDPGPMGPPGRHGHGDQKERKARKVNKCMVAEGKEEVLGFKGRA
KSVLHWAPPLAAQRFRVDLRCLTAKMSLPVS
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcagaagtgtgaagggctggagaaaagaagaaaaaaagaaattgcttccagca
agccttccaatcaccttcccatgtgtttccaaccctgctaatgagaatcttgctcctgag
gtaggaggtggaaatgatatggattctttaacaaagaaaacgaggcaagatggatcagaa
gttacagagagacttattacagagacagtaactacaagactgacatctttaccacccaaa
ggagggagcagtagtggactcaagacatcatcccacactggaggaagtggagttgaaaag
aggtcttacacccatagcagtggctatgtgacttcaagtggaagtggtagattgaactca
tcgtcgtctggctacaggcaaacacagtctcctagctcaactctcaccaaatcacctggc
tcaacatttgaaagaaaaacccatgtcaaccgccatgcaacatatgaagggagctccagt
gctaactcttctccagagttccccagaaaagagtttgcatctgcctccacacgagggcga
agccaaagtcgagagagtgaaatacgagtccggctgcagagcgcatctccctctggcaga
tggacggagttggatgatgtcaaacgtttactgaaaggaagtcgatcagccagctgcagc
ccgactcggtcatcgtcaagtaccctcccaataccaaaaaaagctgtggtggagacaaaa
atggttactgagagctctcagtcagtgtcagggacatatgatacaactatactaaataca
gccctcccaccatacacatggtcctcaactctgcctgctggatcttcccttggaggatac
cacaacagcatgggccagagctcttctttggtcaatgctatgtctcactctacaggatca
gtttttggtgttccaaataacctggctcccagcagtcatactctgaacacaggcctgagc
acatcctcaacagtgttcggagttcaaaacaatctgtcaccaagctcttcagccctgaat
gccactgcagcctctgcagcatatgggatgaagaacacttctcagacaaacaccatgaat
agtactggtgtgtctgcctcagcaggtggaactgttttgagctcccagggagacgacttt
ctgcgcaaagactgcaagttcctgctgctggagaaagagaatgccccagcaaagaaggag
atggagctcttagtcatgaccaaggatagtggcaaagtctttagtgcatcttccactggg
cttaatggaggatcctttgcagaagacaccttgaagaaggaaaagcaggggctttcttct
tacgtggcagatactggcctgaaatcagatacaaatggaggattgaaatcagcgccaaca
agggacaaagcaacatatgcagaaatacgaaatggtgatgcaggcggtgcaattggatca
gcaccttcctggtgtccctgtggttcctgctgtagctggtggaaatggcttctgggtttg
cttctggcatggttgcttctccttggattgctctttggactcattgctctggcggaagaa
gtgagaaagctgagatctcgtgtggacaacctggaaaaaataaatcacagcttcctgaca
gttaaccaagggaatccgtatttagaaaaagacgtttctaaagtggattttcttcatggt
gcggcaccgtcttcaaccttcccttttgaaaatgaagaatcagtttggttgatggtgaag
agcagactgaataaggaaatagaacgaggctacttccgaggggagagaggagaacctggt
atgaaaggtgacatgggattgcaaggtcccaaaggggatcgagggcttcccggtgtccca
ggcattcctggtccagcggggcaccaaggaccagaaggaccaaaaggacagaagggcagc
atgggtgatcctggcatggaaggtcccatgggacaaagaggtcgagaagggctaccaggg
cctcgaggagagcctggaccacctggatttggagaaaaaggagatagaggtgctgcaggt
cctcctgggccacctggtcccccagggtctgctggccttaaaggtccaatgggttctcca
ggccctcaaggacctccaggtcctcctggccttcaaggatttagaggagaagcaggtctc
ccaggtgctaaaggtgagaaaggagctactggatccccaggacccaaaggtgatcagggt
gagaaaggagctcgtggaatgacaggtgaacaaggctcaagaggcatacctggtcctcca
ggagagccaggagctaaaggacctgcaggacaagctggccgtgatggacagccaggtgaa
aaaggtgaaccaggtctcatgggaatgccaggagcccgaggccctccaggtccttctgga
gatgcaggagagccaggtctcacaggaccccagggaccaccaggacttccaggcaaccca
ggcagaccaggggctaaaggagaacctggatctccaggcaaagtcataagtgctgagggt
tcatcaactattgctctgccaggcccaccaggtcctccaggacccatgggccccactgga
cctcctggtgttccaggtcctattgggccagctggtctccctggacaacaaggtccacgg
ggtgagaagggatccgcaggtgaagctgtgatagaaactatcaggacagaagtctcgtca
ctggcatctcagatgttgggagatatacaagggcgagcaggaccaccaggtccccctgga
ccaccaggtgaatctgtgcagggacttcctgggcctcgtggtccccctggattgccagga
ccttcaggcccaccagggagaccaggatcttcagtgtccacctcagaaacatttgtctct
ggcccacccggtccaccaggtccaccaggcccgaagggagaccaaggtgaacgaggtcca
cgaggattcacaggtgaaccaggtgaacctggccttccaggattctcttcccatggtggt
acagtcaccatgcagggacctccaggcccaccaggcccaccaggacctaaaggtgatgca
ggtgtcccaggcgctcctggcatcccaggaacatctcgaggtggatccagacaaatccag
ggacccccggggcctcctgggccaccaggtcctcctggcccaggtggaagttcctctcaa
gagattcagcattatgtcgctgattacctgaaaagtgataacataaggcattatttgact
ggtgcccaaggtcctccaggccctccaggcccacctggaatcctcaccactgcagatggg
aagagttttgattttgcagagctggctacccgtgttatgagctatatgacaagctcttca
gatcattatcagtcatttgccagttcagtatcaactacatctgttttgtaccaagaactt
ttgaacctgctgcagagagaggaaattcgtcagtatctagttggacctcggggcccacca
ggacctcctggaccaggagtagatggaatgtctctgtcactggattatgatgagttgacc
agacggtttattagctacttgacaagttctggtatgagcattggactccctggaccgcct
gggcctccaggttcaccaggcatatcttacagtgaactgacagcatacctgagaaactct
gaattcagtggtcttgtcggaccccctgggcctgcagggcccccaggacccccagggatc
cctggatcatctggcacctctctggaggacatctctgcttacctacaaagtgttggatac
tcttctatctctggcatgcagggcccacctggccctcctggccctccgggaccaccaggc
ttctcaggaactggcctcctgtcctacgctgacatcacccacagtgatgaattcaggagt
gagctgatccagtacctgaagagtgatgaagttcgaagctacatctcagggcctcctggg
ccccctgggccacggggaccaccaggacccaaaggagatagtggtttggtggctgggtct
atgtcttcactgtatcatgattcactggcttctgaacggtcgcatggaggatccatgggc
gccgagggatcccatggaggatcacttggcacaggcagctcttacagcagctccatgagc
agcagcaggtcatcatacagtgcctccatgggcaacgatggctcctatggtgcgtccctg
ggcagcgatgggtcgtttgatgggctgctgacagctgaggagtcacacaggagatcagcg
ggtccaggcagatcttatagcaactcctttactggatccttggattacagtgagctggct
cgacgtgtgtcagagaacctacaaagccaaggtatcctccaggacttcatgtcttacact
ggacaggggcccccaggcccgccaggacctcctggacctcctggaataagcagagtcttt
gcagcctatggcaatgtcactgaggacctcatggacttcttcagaacacacggtactgtc
cggggaccacctggtgagaaaggagagcggggttatcccggccccaaaggtgacccgggg
ccgatgggcccaccaggacgccatgggcacggggaccaaaaggagagaaaggcgagaaag
gtgaacaagtgtatggtggcagaaggaaaagaagaagtgttggggtttaagggaagagca
aagtcagttctgcactgggctccacccctagcagctcaaagatttcgtgtggatcttcgc
tgtcttactgctaaaatgtccttgccagtcagctaa
DBGET
integrated database retrieval system
