Tympanuchus pallidicinctus (lesser prairie-chicken): 128078101
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Entry
128078101 CDS
T08967
Symbol
HERC4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128078101 (HERC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpai04121
]
128078101 (HERC4)
Enzymes [BR:
tpai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
128078101 (HERC4)
Ubiquitin system [BR:
tpai04121
]
Ubiquitin ligases (E3)
HECT type E3
128078101 (HERC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Motif
Other DBs
NCBI-GeneID:
128078101
NCBI-ProteinID:
XP_052533955
LinkDB
All DBs
Position
Unknown
AA seq
1056 aa
AA seq
DB search
MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFLNKRIRDVGCGLRHTVFVLDDGTVYTCGC
NDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDGQLGLPG
TEECIRVPRNIKSLSEIQIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQNS
PHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDDNDRYVPTLLKSLR
TQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSLVTQIT
CGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTVKGNWLPYSTQCLIPADSEQ
YYCVKRIFSGGDQSFAHYFYPQNMVPPDDFRYPDVLKQIWTVNETFIQRLLTFPSGRLPV
EIANEIDGTFSSAGCLNGSFLALSNDDHYKTSVRFSGVDMNAARLLFHKLIQPDHAHISQ
QVAASLEKNLIPKLSSSLPDVEALRLYLTLPECPLMSDANNFTTLAIPFGTAILKLEKAP
LKVLENWWSVLEPPLFLKIVELYKDVVVHLLKLYKIGIPPAERRIFTNFLHTAFRVLEIL
HRVNERGQVIQYDRFYIHEIQDLIDIRNDYVNWVQQQVFGMDVNHGLTELTDMPVTICTY
PFVFDAQAKTTLLQTDAVMQMQMAVDQAHRQNLSSLFLPVFESVNPCLILMVRRDNIVGD
AVEVLRKTKSVDYKKPLKVIFVGEEAVDVGGVRKEFFLLIMRELLDPKYGMFRYYEESRL
IWFSDKTFEDSDLFHLIGVVCGLAIYNFTIVDLHFPLALYKKLLNKKPSLDDLKELMPDV
GRGMQQLLDYPEDDIEEAFCLNFTITVENFGTTEIKELVPNGADIPVVKQNRQDFVDAYV
DYIFNKSVASLFSAFHEGFHKVCGGKVLQLFQPSELQSMVIGNTNYDWKELEKNTEYKGE
YWADHPTIKIFWEVFHQLPLEKKKQFLLFLTGSDRIPILGMKCLKLVIQPTGGGEGYLPV
AHTCFNLLDLPKYTDKETLKSKLIQAIDHYEGFSLV
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgctggggaaatgcgtcgtttggacaacttggactgggtggaattgatgaagag
attgttttagaacccagaaaaagtgactttttcttaaataaaaggatcagagatgtgggg
tgtggactaagacacactgtttttgtcctggatgatgggactgtttatacgtgtggatgc
aatgacctaggacaactagggcatgaaaaagccaggaaaagacctgagcacgttggtgcc
ctggatgcccaaaatattgtagctgtatcatgtggagaagcccacactcttgcattaaat
gacaagggtcaggtatatgcttggggtctggctactgatggacagcttggcttgcctgga
acagaagaatgcatcagagtgcccagaaatattaaaagcttatcagagatacaaattgtg
caagttgcttgtggttattatcactcacttgcactctcaaaaggaagtgaagtgttttcc
tggggacaaaataaatatggccagctgggcttaggttacgagtataaaaaacaaaactcc
ccacatgtgattaaatctctgctgggaatcccttttgcacagattgcagcaggaggagct
cacagttttgtattaactctttctggagccatctttggatggggacgcaacaaatttgga
cagctgggtcttaatgatgataatgacaggtatgttcctaccctgctgaagtcactgaga
actcagaaggttgttcatatatgttgtggagaggatcatactgctgcccttacaaaggaa
ggtggggtttttacgtttggagctggaggctatggtcagttgggacacaactctaccagc
cacgagataaaccctaggaaagtttttgaactgatgggaagtcttgtcacacagataact
tgtggcaggcagcacactactgcatttgttccttcgtctggaagaatttactcttttgga
cttggaggtaacgggcagttaggtacaggaacaaccagtaataggaagagtcccttcaca
gtaaaaggaaactggcttccttacagtactcagtgcctgatccctgcagacagtgagcag
tattattgcgtgaaaagaattttctctggtggggaccaaagttttgcacactacttttat
ccacagaacatggtgccaccagatgacttcaggtatcctgacgttttgaagcagatctgg
actgtgaatgaaacatttattcaaagattgctgactttcccatctggaaggcttcctgta
gagatagctaatgaaattgatggtacgttctcctcagctggatgcctgaatgggagcttt
ttggctttgagcaatgacgatcattacaaaaccagcgttagattctcaggggttgatatg
aatgctgctagactactatttcacaaacttatacagcctgaccacgctcatatatcacaa
caggtggcagctagtttggaaaagaatcttattccaaaattgagcagctccttaccagat
gttgaagctttaaggctgtatctcactctaccagagtgcccgttgatgagtgatgcaaac
aatttcacaacattagctattccatttggaacagcaattctgaaattagaaaaagctcct
ttaaaagttcttgaaaattggtggtctgtacttgaacctccgttgttcctcaaaatagtg
gaactctacaaggatgttgtggtccacctcttgaagctgtataagattggcattcctcca
gctgaaagaagaatatttacaaactttctgcacacagctttcagagttctagaaatactg
cacagggtaaatgaaagaggacaagttatccagtatgacagattttatattcatgaaata
caagatttgatagatatcagaaatgactatgtcaactgggtccagcagcaggtatttgga
atggatgtcaaccatggattaactgagttaacagacatgcctgttaccatttgcacgtac
ccatttgtttttgatgcccaggcaaagacaactcttctgcaaacagatgcagtcatgcag
atgcagatggctgttgatcaagctcacaggcagaatttgtcttctctttttctgccagta
tttgaatctgttaacccatgcctgatattaatggtgaggagagacaatattgtaggagat
gctgtggaagtcctaaggaaaacaaagagtgtagactacaagaagccattgaaggttatt
tttgttggggaagaagctgttgatgttggaggtgttcgcaaagaattttttctgctcata
atgagggagttgctagatcccaaatatggaatgttcaggtattacgaagagtccaggctg
atctggttctctgataagacctttgaagacagtgacttgtttcatttgattggtgttgtc
tgtgggctagcaatatataattttactattgtagaccttcacttccctttggctttgtat
aaaaagctgttgaataagaagccatccctggacgatttaaaagagttgatgccagatgtt
ggcaggggaatgcagcaattactggactatccagaggatgacatagaagaggcattttgt
cttaattttactatcactgtggaaaattttggtacaacagaaattaaagaacttgttcct
aatggtgctgacattcctgtagtcaaacaaaataggcaagattttgtagatgcatatgtg
gattacatcttcaataaatcagtagcttccttattcagtgcattccatgaaggcttccac
aaagtatgtggaggtaaagttcttcagctcttccagcccagcgagttgcaatcaatggta
attgggaacacaaattatgattggaaagaactggagaagaatacggaatacaaaggagaa
tactgggcagaccatcctacaattaaaatattctgggaggtttttcatcagttgcctttg
gagaagaaaaaacagtttttgttgtttctgacaggcagtgatcgtattccaatccttgga
atgaagtgtcttaaactagtcatccagccaacaggaggtggagaaggttatcttccggta
gctcacacttgctttaatcttcttgatcttccaaaatacacagataaagaaacgctaaaa
tctaagctgatccaggctatagatcactatgaaggtttcagtttagtataa
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integrated database retrieval system
