Tympanuchus pallidicinctus (lesser prairie-chicken): 128078109
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Entry
128078109 CDS
T08967
Name
(RefSeq) nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tpai03009
]
128078109
03036 Chromosome and associated proteins [BR:
tpai03036
]
128078109
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128078109
Ribosome biogenesis [BR:
tpai03009
]
Eukaryotic type
Pre-60S particles
Helicases
128078109
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128078109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
DD_DDX21-DDX50
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_30
LRIF1
Peptidase_S64
Motif
Other DBs
NCBI-GeneID:
128078109
NCBI-ProteinID:
XP_052533982
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MPEATRIRAGSGAESEPDSPMESEAAPDGSRRRRKKEKKEKKSKRHDKARKRKAQADESE
QSEEEESDSPKPKKAKNRGKQNGHVREESPENAKLSSISAKSTHKKQPSNSSETSSGDGD
SDQEQEMTEEQKEGAFSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQART
GTGKTFSFAIPLIEKLQTDSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACF
YGGTPYNGQIDLIRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQ
VEDILRVAYKKDSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVE
HLAIECHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKDANELALNASIKQDCQSLHGDIP
QKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAG
RTGICICFYQRKEENQLRYVEQKAGITFKRVGVPTATDIIKASSKDAIRCLDSVPQSAID
YFKESAQLLIEEKGPVNALAAALAHISGATSIEQRSLLNSDVGFVTMVLRCSEEINNMSY
VWRKLREQLGGDVDRKVNRMCFIKGRMGVCFDIPAADQKDIEERWEDSKQCCLCVANELP
ELEESQRGGGGGGGGGGRGRGGGGGGGRGRGRGGNSRSFSGSRNGRRGGSGRNRFKSSGQ
KRSYDRAFDR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaggctacccggatccgtgccggcagcggggccgagtcggagcccgacagccct
atggaaagtgaggctgcgccagacggcagccggcggcggcgcaagaaggagaagaaagag
aagaaatccaagcggcacgataaggctcggaagaggaaagctcaggcagatgaaagcgag
cagtcagaagaagaagagagtgactcgccaaagcccaagaaagcaaagaacagagggaag
caaaatgggcacgtgagggaggagagcccagagaatgccaagctgtcttctatcagtgcc
aaatccacccacaagaaacagcccagcaactccagcgaaacgtccagcggggatggggac
agtgaccaggagcaggaaatgactgaagagcagaaagagggtgctttctccaatttccct
atctctaaagggaccgttcagcttcttcaagctcgaggagtgacatacctgtttcctgtg
caagtgaagaccttccacccagtatattctggcaaagatgtaattgctcaagcacgaact
ggaacagggaagactttctcttttgctattccattaattgaaaagcttcagacggattcg
caggaaagaagaagaggccgttcaccaaaagttctggttcttgctccaacaagagagctg
gcaaaccaggttgccaaagatttcaaggacataacgagaaagctgacagtagcttgtttt
tatggaggaacaccatacaatggacaaattgatctcattagaagtggaattgacattttg
gttgggacacctggtcgaatcaaagaccatcttcagaatggcaagctggaccttaccaag
gtgaaacatgttgtccttgatgaagttgaccagatgttggacatgggatttgctgaacag
gtggaggacatcttacgagttgcgtacaagaaagattctgaagacaatccccagacgctg
ctgttttctgcaacatgcccaaactgggtgtatgatgtggccaaaaaatacatgaagtct
aaatatgagcaggttgacttgattgggagaaaaactcagaaggctgctacaacagtagaa
catttggccatagaatgtcactggtctcagagagctgcagttattggagatgtcattcag
gtctacagtggcagccacgggaggaccattgtattttgtgaaaccaaaaaggatgcaaat
gaactggctctgaatgcgtcaatcaagcaggattgccagtcattgcatggtgacattcct
cagaagcaaagagagatcacactgaaaggttttagaaacggtgcatttaaagttctggtt
gcaaccaatgtagctgcccgtggtttagatatccctgaagttgacctagttgtacaaagt
tcaccaccaaaggatgtggaatcctacatccatcgttctggacgcacaggtcgagcgggc
cggactgggatctgtatctgtttttatcagcgaaaggaagaaaatcagttaagatatgtg
gaacagaaagcgggcattacattcaagcgtgttggtgttcctactgcaacagatataata
aaagcttccagcaaagatgctatcagatgtctggattctgttccccagtctgctattgat
tatttcaaagagtctgctcagttgctaatagaagaaaagggaccagttaatgctttggct
gcagctctagcacatatttcaggtgctacttccattgaacagcgctccctgctgaactca
gatgtgggatttgttacaatggtactgcgctgctctgaagaaataaacaatatgagctat
gtttggcgaaaactacgggagcagctgggtggtgatgttgacagaaaggtgaacagaatg
tgtttcatcaagggaagaatgggtgtgtgctttgatattcctgcagcagatcaaaaggac
atagaggaaagatgggaagattccaagcagtgctgtctgtgtgtggcaaatgaattacct
gagctagaagaatcccagcgaggaggtggaggaggaggaggaggaggaggaagaggaagg
ggaggaggaggaggaggaggaagaggacgaggaagaggaggaaatagcagaagcttctca
ggctccaggaatggacggcggggtggctcgggaagaaacagattcaaaagcagcggccag
aaacgaagctatgacagagcgtttgatcgctga
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