Tympanuchus pallidicinctus (lesser prairie-chicken): 128078207
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Entry
128078207 CDS
T08967
Symbol
ZSWIM8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpai04121
]
128078207 (ZSWIM8)
Ubiquitin system [BR:
tpai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
128078207 (ZSWIM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
128078207
NCBI-ProteinID:
XP_052534174
LinkDB
All DBs
Position
Unknown
AA seq
1822 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDHFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKMKD
GLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGS
ADEFQRGEQLFRVRAVKDPLQIGFHLSATVVPPQMMSPKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTDQCLNYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTISPQRRRDLCSQLRQWQLKVIDNVKRGQHKKSLEKLFQGFKPAVEACYFNWEEAY
PIPGITYSSTDKKNSFCWVKAIQQRSCRLQCAEAACEAGRAHGQEPGGPCLQPGDRLRPS
PQEPAVRPKELTGKRKVVSETPQRVLRRLSAEGDKAVYKTAVGKAKLPVSKGLTSKHSGK
RRMSSEDSSLEPDLAEMSLDDSSLALGAEASNTFSFTESPLSRSYRDAFEEDGGVYFSEG
PEPSVRSSSTGKKSTKDPVGETGSGDDDLTSADENSGGVSLKPEEVGENGAAGGGDDGEE
EDDYQVYYLNPQEVAKEDDDKAEGGNEEEQDMFAGIKPLEQENRMEILFACAEALYAHGY
SNEACRLTVELARDLLANPPDLKVEQPPTKGKKNKVSTSKQTWMATNTLSKAAFLLTVLS
ERLEYHNLAFRIGMFALELQRPPASTKALEVKLAYQESEIAALLKKIPLVTNEMNTIRGR
AEELREGTLCDYRPVLPLMLASFIFDVLCTPVVSPTGCRPPSRNWNNEMPGDEELGFEAA
VAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILDKLLDRESQTHK
PQTLSSFYSSSKPTVANQKSPSKHAAQSTAAIQQLPGTSVAQQAGVSPAVQSSPETFVEK
SSQESSQRSPCEPAGESTVLKQEGKVPSRLALGNRGGYNGRCWGSPVRQKKKHTGMASID
SSAPETTSDSSPTLSRRPLRGGWAATSWGRGQDSDSISSSSSDSLGSSSSSGSRRASGGA
RAKTVEVGRYKGRRLESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSS
GGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILV
ECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQ
DNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQIVGGTPAQREGATGCSAGGAR
AASEAARGLTDNRVTTEPTTVTVAAAVTAAATVVPVISMGSTMYQQHTMAGPAMAHTHTQ
GLHPYTTLQTHIPCNPQYIGHTIQHMPRPAVFPVPGSAYPQSVHPAFIGAQYPYSVTTPS
LAATAVSFPGVPVPSMTQIAVHPYHSETGLSLSSNVAIGSVHAGSTFPAIQGASLTSLSS
QPNSLVTGGFPAEDEQHSQPVSPQGLHYLHSAYQVGMLALEMLGRRTQSDHPNNFSRSPP
YTEDVKWLLGLAAKLGVNYVHQFCVGAAKGVLNPFVLQDIIMEALQRLNPAHVHNHLRTP
AFHQLVQRCQQVYLQYIHYRLIHLAPADYDDFVNAIRSARSAFCLTPVGMMQFNDILQNL
KRGKQTKDLWQRVSLEMTTFSP
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atggaactcatgtttgcggagtgggaggacggggagaggttctccttcgaggactctgac
cactttgaggaggactccctttgttccttcatctcagaggcagagagcctttgccagaac
tggagaggatggcggaagcaatcggccggacccaattctcccactgtcaaaatgaaagat
gggctggtgatcccattggtggaactgtctgcaaaacaggttgcatttcacattccattt
gaggtcgtggaaaaagtttatcctccagttcctgagcaactacagcttcggattgccttc
tggagtttccctgaaaatgaggaagatattagactgtactcgtgtttggctaatggcagt
gcagacgagttccagagaggggagcagctgttccgagtgagggcagtcaaagaccctctc
cagataggtttccatctgagtgccactgtggtacccccgcagatgatgtcacccaaaggt
gcatacaatgtggcagtgatgtttgaccgatgcaggatcacatcatgcagctgtacctgt
ggtgctggggccaaatggtgcgctcacgtcgtggcgctctgtctcttccggatacacaat
gcatctgcggtatgcttacgagcacctgtttctgagtccttgtctcggctacaaagagac
caattgcaaaaatttgctcagtacctaatcagtgaacttccacaacagattcttccaact
gctcagcgtttgctggatgaactgttatcttctcagtcaactgcaatcaacacagtgtgt
ggagccccagatcccactgctggaccctctgcgtcagatcaaagcacctggtacctagat
gaatctaccctgagtgacaacataaagaaaacccttcataaattctgtgggccctctcct
gttgttttcagtgatgtgaattccatgtatctctcttccacggagcctccggctgctgct
gagtgggcctgccttctgcgtcccctgcgagggagagagcctgagggaatctggaacctc
ctttctattgtgcgggagatgtttaagagacgggatagcaacgctgctcctttgctggag
attctgactgaccagtgtctgaactatgagcagataaccggctggtggtacagcgtgcgg
acgtctgcgtcacacagcagtgctagcgggcacacaggacgcagcaatgggcagtcagaa
gtagctgctcatgcctgtgcaagtatgtgtgatgagatggtggttctttggcggctggct
gtccttgacccaactataagtccacagaggcgcagggacctttgctcccagctcaggcag
tggcagctaaaagtcatagataatgttaagagaggtcagcacaagaaatcactggagaag
ctgttccagggtttcaagccagcagtggaagcctgctacttcaactgggaggaagcttat
cctatccctgggatcacctatagcagcactgacaagaaaaactcattctgttgggtaaaa
gccatccaacagaggagctgccggttgcagtgtgcagaagctgcttgtgaggctggtaga
gcccatggacaggagcctgggggaccatgtctgcaacctggggacaggctgcgtccctca
ccccaggagccagcagttcgtccaaaggaacttactggaaagcgaaaagtcgtctctgaa
acaccgcagagagttctgcgacgactttcagcagaaggtgataaagctgtgtataagact
gcagtgggcaaagctaagttgccagtgagcaaaggtttgaccagcaagcatagtgggaaa
cgccgcatgagcagtgaagacagctccctggagccggacttagcagagatgagcctagac
gacagcagcttggctctgggtgcagaagccagcaatacgtttagttttacagaaagccca
ctgagcaggagctacagggatgcctttgaggaggatggtggggtgtacttctctgaggga
cctgagcccagtgtcaggagcagttccacaggcaagaaatcaaccaaggatcctgtggga
gagacaggtagtggtgatgatgacctgacttctgcagatgagaacagtggtggtgtgagc
ctgaagccagaagaagtaggagagaatggtgcggcaggtggaggggatgatggagaagag
gaagatgattaccaggtatactatctgaatccacaagaggtagccaaggaagatgatgac
aaagctgaagggggaaatgaagaggaacaggatatgtttgctggtataaagcctctggag
caggagaaccggatggagatcctgtttgcctgtgcagaagccctgtatgcacatggatac
agcaatgaagcatgtcgcttaactgtagaacttgccagggaccttttagccaaccctcca
gatctcaaagtggagcagccaccaactaagggcaaaaagaacaaggtatcaaccagcaag
caaacatggatggcaaccaacaccttgtccaaagctgctttcctgctgactgtactgagt
gagaggctggagtaccacaacctggccttccgaataggaatgtttgctctggagctgcag
agaccgcctgcctctacaaaagcactagaggtgaagctggcatatcaggagtctgagatt
gcagccctcttgaagaagattcccttggtcactaatgagatgaatactattcgaggaaga
gctgaagaactgcgagaaggaacactgtgtgattatcgtcctgtcctgcctctcatgttg
gctagctttatatttgatgtcctgtgcactccagtggtttctcctacaggctgtagacct
ccaagtcgcaattggaataatgaaatgcctggagatgaagagcttggttttgaagcagct
gttgctgctcttggcatgaagacaactgtcagtgaagcagaacatcctctgttgtgtgaa
ggcactcgaagggagaaaggagatctggcactagcgctgatgattacctacaaggatgat
cagtcgaagctgaagaagattttagacaaacttctggacagagagagtcagactcataag
ccacagactctgagttccttctactcttccagcaagcctacagtagcaaaccaaaagtct
ccttccaaacatgctgcccagtccactgcagccatccagcagcttccagggacttcagtt
gctcagcaagctggtgtaagcccagcagttcagagcagtcctgagacttttgtggagaag
agttcacaagagagctctcagaggtccccctgtgagccagctggggaatccactgtcttg
aaacaggaaggaaaggtccccagtcgtctggcccttggaaaccgaggtggatacaacgga
agatgttggggttcacctgtcaggcagaagaagaaacacacaggcatggctagtattgac
agcagtgctcctgaaactacctctgacagttctccaacactcagtcggcgtcccctacgt
gggggatgggcagcaacatcttggggccgaggacaagacagcgacagcatcagtagttct
tcaagtgattcactgggatcttcctcttccagtggcagtaggagagccagtgggggagcc
cgtgcaaaaactgtggaagttggcaggtataaagggaggcggctggaaagccatgctcct
catgtcccgaaccagccttcagaggcagctgcccacttctactttgaattggccaagaca
gtccttatcaaagcaggtggaaacagcagtacctccatcttcacccacccttcctccagt
ggtggacaccagggaccacaccgcaaccttcacctctgcgcctttgagattgggctgtat
gcactagggctgcacaactttgtgtctcccaactggctctctcgaacttactcctcccat
gtctcctggatcacagggcaggccatggagattggtagcgcagccctgaacatcttagtg
gagtgttgggatggacatctgacccccccagaggtggcatcattggcagacagagcatcg
cgggccagagactccaacatggtgagggcagctgctgaactggcactcagctgcctgccc
cacgcccatgccctgaatccaaatgagatccagagggctctggtgcagtgcaaggaacag
gacaatctgatgctggaaaaggcctgtatggcagtagaagaggcagccaagggaggtggc
gtttacccagaagttctctttgaagtagctcaccagtggtactggctttatgaacagatt
gttggtgggactccagctcagagagaaggtgccactggctgcagtgccggtggtgcacgg
gctgcgtcagaagcagcacgtgggttgacagacaaccgggtgaccactgagccgaccacc
gtaacagtggcagctgcagtaaccgcagcagcaacggtcgtgccagtaatctctatgggg
tcaaccatgtaccagcagcatacgatggcaggaccggcaatggcgcatacacacacgcag
ggcctccacccttacaccacccttcagactcacattccctgtaatccccagtatattgga
cacactatccagcacatgccacgtccagctgtcttcccagtgcctggctcagcgtaccca
cagagtgtccatccagcattcataggagcgcagtacccctattcggtaacaacaccatca
ttggcagctactgcagtgtcgttccctggtgttccagtcccatccatgacacagatagca
gtgcatccctaccacagtgaaactggactgtcactgtcttccaatgtagcaataggaagt
gtccatgcaggatcaacgttcccagcaattcaaggggcttccttgacatctctgtcctca
cagcccaattcccttgttacaggggggtttcccgccgaggatgagcagcacagtcagcct
gtgagcccccagggtttgcactacctccactccgcataccaagttgggatgctggctctg
gagatgcttggccgaagaactcagagcgatcatcccaacaacttctcccgcagtccaccc
tatacagaggatgtaaaatggctccttggattggctgcaaagctaggtgtaaactacgtg
catcagttttgtgtcggtgcagccaagggagtgctgaacccttttgtgcttcaggatatc
atcatggaagctctacagaggctcaaccctgcacatgtgcacaaccatctgcgcacccca
gccttccaccagctggtgcagaggtgccagcaggtctacttgcagtacatccattaccgg
ctgatccacctcgccccagctgactacgatgattttgtgaatgccatccgcagcgccaga
agcgccttctgcctgactcccgtgggcatgatgcagtttaatgatattctccagaacctg
aagcgtggcaagcaaacaaaggatctgtggcaaagggtctctctggaaatgaccaccttc
tcaccatga
DBGET
integrated database retrieval system
