Tympanuchus pallidicinctus (lesser prairie-chicken): 128078431
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Entry
128078431 CDS
T08967
Name
(RefSeq) contactin-4 isoform X1
KO
K06762
contactin 4
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tpai04515
]
128078431
Cell adhesion molecules [BR:
tpai04515
]
Immunoglobulin superfamily
Contactins
128078431
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_5
Sp38
V-set_CD47
Ig_C17orf99
Pur_ac_phosph_N
Tissue_fac
fn3_4
Motif
Other DBs
NCBI-GeneID:
128078431
NCBI-ProteinID:
XP_052534573
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MRLLWELLVLRSFMVCLADDNMLHGPVFLQEPSSVIFPLDSEEKKVKLNCEVKGNPRPTI
GWKLNGTNIDIGMDYRYSTVEGNLLINNPNKTQDTGTYQCVATNPFGRIISREAKLQFAY
LENFKTRVRSTVSVRQGQGMVLLCGPPPHSGELTYAWIFNEYPSFVHQDNRRFVSQETGN
LYIAKVEASDVGNYTCVVTNTVTNSRVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPSA
KGTAVKLECFALGNPVPTISWRRADGKQIPRKARRHRSNGLLEIPNFQQEDAGLYECVAE
NVRGKNVARGQLTFYAQPNWIQKISDVHAAIEENVFWECHASGRPKPSYRWLKDGEPLLP
QGRVQIEQGSLSIRNVSLSDAGMYQCVAENRHGSIYASAELSVIAVGPDFSKTLLKKLTL
VKVGGEVIIECKPKASPRPTYSWKKGKDILRENERITVLDDGSLRIVNVTKSDTGSYTCL
ATNRFGTASSTGSLVVKDPTRVMVSPFSMDVTVGESIVLPCQVSHDHSLDIVFTWSFNGH
LIDFEKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPPG
PPEDVTIDEITDTTAQLSWRPGADNHSPITMYVVQARTPFSVGWQAVSTVPEVIDGRTFT
ATVVGLNPWVEYEFRVVAANLIGIGEPSRPSENRRTEEALPEVTPANVSGGGGSKSELVI
TWETVPEELQNGGGFGYVVAFRPFGTISWMQTVVASPDASRYVFRNESLPPFSPYEVKVG
VYNNKGEGSFSPVTVVYSAEEEPTRAPITVLARSLSATDIEISWAPPRDNQHKGRIQGYE
VRCWRHDEKEENARKIRTVGNQTSAKVTNLQGNALYHLAVKAYNTAGTGPSSAMVNVTTK
KPPPSQPPGNIIWNSSDSKIILNWDQVKALDNESEVQGYKVLYRWNRQSSASVIETNRTS
VELSLPFDEDYIIEIKPFSDGGDGSSSEQIRIPKISNAYARGGSSSTSNACTLSAISTIM
ISLTARSSL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgaggttgctatgggagctgctcgtgctgcgatcattcatggtgtgccttgcagacgac
aacatgctgcacgggccggttttcctgcaggagcccagcagtgtgatcttccccttggat
tcagaagaaaagaaagtaaagctaaactgcgaagtgaaaggaaatccccggccaaccatt
gggtggaagttaaatggaaccaacattgacatcggtatggattaccgctacagcacggtg
gaaggcaacctattgatcaataatcccaataaaactcaagatactggaacataccagtgt
gtagcaacaaacccatttggaaggatcattagcagagaagcaaagcttcagtttgcttat
ctcgagaacttcaagaccagagtaagaagcacagtgtccgtccgccagggccagggcatg
gtgctgctgtgcggaccaccgccacactctggagagctcacctacgcctggatcttcaat
gagtacccatcgttcgtgcaccaggacaaccgccgcttcgtctcgcaggagacggggaat
ctgtacatcgcaaaggtggaagcttcagacgtgggcaactacacgtgtgtggtgaccaac
acggtgaccaacagccgggtcctgggccctcccaccccgctcatcctcaggaacgacggg
gtgatgggggaatacgagccgaaaatagaagtgcagttcccagaaacagttccgtctgca
aaaggaacagcggtgaaactggagtgctttgccctgggaaaccccgttcctacgatcagc
tggaggagagcagacgggaaacagatacccagaaaagccaggagacacagatcaaatggg
cttctggagatcccaaattttcagcaagaagatgctggactctacgagtgtgtcgctgaa
aatgtgagagggaaaaacgtggcacgaggacagctgacattttatgctcagcccaactgg
attcagaagatcagtgatgtacacgcagccattgaggaaaatgtcttctgggagtgccat
gcgagcgggaggccaaagccctcctaccgctggctgaaggatggcgaaccactactgcct
cagggcagagttcagatagagcagggctcactgtccataaggaatgtcagcctgtcggat
gccggcatgtatcagtgtgttgcagaaaacagacacggctccatttatgccagtgcagaa
ctgagtgtcatagctgtcgggccagacttttccaaaacgctcctgaaaaagttaactctt
gtgaaagtgggcggtgaggtaatcattgagtgcaagccgaaagcttcccccagacctact
tattcttggaagaaaggaaaagacatcctaagagaaaatgagagaatcaccgttttggat
gatggcagcctccgaattgtcaacgtcaccaagtcggacactgggagctacacctgcttg
gccaccaaccgctttgggacagcgagcagcaccggcagcttggttgtgaaagatccaaca
cgggtgatggtgtcacctttcagcatggatgtcactgttggagaaagtatcgtcctgcct
tgccaggtgtctcacgatcactcactcgatatcgtgttcacctggtcattcaatgggcat
ctgatagactttgaaaaagatggggatcactttgaaagagtcggcgggcaggattcagct
ggtgatttgatgatcagaagcatccagctgaagcatgctgggaaatacgtctgcatggtg
caaacaagtgtggacaagctatctgctgctgcagacctgattgtaagaggtcccccaggt
ccccccgaggacgtgacgatcgatgagatcaccgacaccacggcccagctgtcctggagg
cccggagcagacaaccacagccccatcaccatgtacgtggtgcaggcacggacgcccttc
tcggtgggctggcaggctgtgagcacagttccagaggtgatcgatggcaggacgttcaca
gccactgtggtgggcctcaacccttgggtcgagtatgagtttcgagtcgtggccgccaac
ctgattgggataggggagccgagcagaccttcggagaacagaagaaccgaagaagctctt
cctgaagtcaccccagccaatgtcagcggaggcggtgggagcaaatcagagctggtcatt
acatgggagaccgtgcccgaggagctgcagaacggaggcggctttggctacgtggtggcc
ttccgcccctttggcaccatcagctggatgcagaccgtcgtggcctccccagatgcctcc
agatacgtcttccgcaatgagagcctgccgcccttctcaccctacgaagtgaaagtgggg
gtgtacaacaacaagggggaaggctccttcagccccgtgacggtcgtgtactcagcagag
gaagagccgaccagagctccgatcacagttctcgccagaagcctttctgccacagacatt
gaaatttcttgggctcctcctcgagacaatcagcacaaaggaaggatacagggctatgag
gtcaggtgttggagacacgacgaaaaggaagagaacgcgagaaagatcaggacagttggt
aaccagacatctgccaaagtcaccaacttgcagggcaatgcgctctatcacctggcagtc
aaagcctacaacactgctggcaccggtccgtccagtgccatggtcaacgtgacgacaaaa
aagccaccaccaagtcagccccctgggaacatcatatggaactcatcagactccaagatc
atactgaactgggaccaagtgaaagcactggataatgagtcagaagtgcagggctacaag
gttctgtacaggtggaacaggcagagcagcgcatcagtgattgaaaccaacaggacctct
gtggaactctccctgccctttgacgaggactacatcatcgagataaagcccttcagtgac
gggggcgatggcagcagcagtgagcagatccggatcccaaagatctcaaatgcatacgca
agaggaggcagctcttcgacctccaacgcctgcacactgtcggccatcagcacgataatg
atctcgctcacagctcggtccagtttatga
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