Tympanuchus pallidicinctus (lesser prairie-chicken): 128078620
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Entry
128078620 CDS
T08967
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpai04121
]
128078620 (PDZRN3)
Enzymes [BR:
tpai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128078620 (PDZRN3)
Ubiquitin system [BR:
tpai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
128078620 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
zf-TRAF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
128078620
NCBI-ProteinID:
XP_052534970
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPANCQRIS
AKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLMLTHGERRSGGHSCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARSASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSASEGIFVSKIVDTGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRTPRTKIFTAPESQLVDVGTQTDIT
FEHIMALSKMGSPTPPVSVLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEVD
LHRVNSQDKLGLTVCYRTDDEDDTGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQNR
EEAVALLTSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTAS
MLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNADDHTTSSNTLG
SQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSANP
YSLYYHTSTLDMSKSDQESVDKELEMLNEELRNIELECLNIVRAHKMQQLKDQYREPWML
HNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLCR
TAEGINCQGNEGAVAYSVSQKNLFAGSESHESSTGKCHSTAKDPDSSKQMECKERKASDG
SKSPTHGQKPSGSCVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSM
CKDFSASQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISE
MKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQGAEEKKEMNIIELSHKKMM
KKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggatcgcttcagcggggaagtggaccccgacttcaagtgcaacctg
tgcaacaaggttctggaggacccgctgaccaccccctgcggccacgtgttctgcgccggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgccaactgccagcgcatctcc
gccaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaaa
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctgcagcacctgggagagcac
gccgagacctgcgacttctcccccgccaagtgccgcaaccgcggctgccgccaggtgctc
aacctgcgcgacgtggaggcgcacatgcgggagcgctgcgaggcgcggccggccgggctg
tgcgagcagggctgcggcctgatgctcacgcacggcgagcgcaggagcggcggccacagc
tgcctgcgggccctgcgcgcccacggggccgctctgcaagcgcgggcggcggcgctggaa
aaggcgctgaagaaggaggcgctgcgcgccgggaagcgggagcagtcgctgctgtcgcgg
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgcttcacg
cagtacagcgcccgcctggacgccctggcccgcgcccgctccgcatcgcccggcaagggt
gaagaaactaaagcgctgactctcgtccttcatcgtgactcaggctctcttggatttaat
attattggtggccgaccgtgcgtggacaatcaagatggttcagccagcgaaggaattttt
gtatcaaaaatagttgacactgggcctgctgctaaggaaggagggctccaaattcatgac
aggattattgaggtcaatgggaaggatttatctaaagcaacgcatgagcaggcagtggaa
gcattcaaaacagccaaggagcccatcgtggtgcaggtgctgaggagaactccacgcacc
aagatcttcactgctcccgagtctcagctggtggatgtgggcactcagacagacatcact
tttgaacacatcatggctctaagcaagatgggctcacctaccccacctgtctcagtgctg
gacccatacctcctacccgaagatcatccatcagtacatgaatactacgacccaaatgac
tacatgggaggaatccatcaagagatggaccgagacgagttagagttggaggaagtagat
ttgcacagagtgaacagccaggacaagcttggtcttacagtgtgctacagaacggatgac
gaggatgacactggtatttatgtgagcgagatcgatcccaacagtattgctgccaaagat
ggtcgactccgagaaggggatcgcattattcaaatcaatggcatagaggtacagaaccga
gaagaagccgtagcacttctcaccagtgaagagagcaagaatatctccttacttgttgca
agaccagaaattcagctggatgaaggatggatggacgatgacagaaatgattttctggat
gacttgcacatggacatgttggaggagcagcaccaccaggcaatgcaatttactgccagc
atgcttcagcagaagaagcacgaggaagacggtggtaccactgacacagccactatttta
tctaaccagcacgagaaggacagtggcgtagggcgcacagatgacagcactcggaatgat
gagagctctgagcaagaaaacaatgcagatgatcacaccacttcctctaacactttaggg
agccagaagaagctgacatacagtcatgacacccttggaagtggtgatatgcagttcagc
aacgagtcgtttatctcagcagactgcacagatgtcgacttccttggcatccctgtagat
gaatgtgagcgattccgggaactgctggaactcaaatgtcaggtgaagtctgccaaccct
tacagcctttattaccataccagcactctggatatgagcaaaagcgaccaagaaagtgtt
gacaaagagctggagatgctgaatgaggagctgcgcaatattgagctagagtgcctgaac
attgtgagagctcataaaatgcagcagctgaaggatcagtaccgggagccctggatgctg
cataacagtgggttccgcaactacaacacaagcatcgatgttcgcaggcatgagctctca
gacattacagagctcccggagaagtctgacaaggatagctcgagtgcatacaacacaggt
gagagctgccgaagcacgccgctcacactcgagatttctcctgacaattccttgtgcaga
actgcagaaggcatcaactgtcaaggtaatgagggagcagtggcatatagtgtctcccaa
aagaatttatttgctggctcagaaagtcatgaatccagcactggtaaatgccattcaact
gcaaaagatcctgacagtagcaaacagatggaatgcaaggagagaaaagccagtgatgga
agcaaaagccccactcatggccaaaaaccttctggctcctgtgtctccccataccaccac
tctccatataagcatgctcatattcctgctcacgcacagcactatcagagctacatgcag
ctgatccaacagaaatcagcagtggaatacgcacagagccaaatgagtctggtgagtatg
tgcaaagacttcagtgcaagccagagtgagccgaggatggagtggaaagtgaaggtccga
agcgatggaacccgctacatcaccaagagaccagtcagggacaggttgctgagagaacga
gccataaagatcaaggaagagcgcagtgggatgactactgatgacgatgccataagtgaa
atgaagatgggccggtactggagcaaggaggagcgcaagcagcatttagtgaaagcaaag
gagcagaggaggagacgtgagtttatgatgcagagcaggctggattgtttaaaggaacaa
caaggtgcagaagaaaagaaagagatgaatatcattgaactgagccacaaaaaaatgatg
aagaaaagaaataaaaaaatatttgacaactggatgacaatccaggaactgcttacccat
ggaacaaagtcaccagacggaacacgagtgtacaattccttcctgtcagtgactactgta
taa
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integrated database retrieval system
