Tympanuchus pallidicinctus (lesser prairie-chicken): 128078706
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Entry
128078706 CDS
T08967
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128078706 (COL7A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
fn3
VWA_2
Kunitz_BPTI
Interfer-bind
DUF1194
YjeF_N
Fndc10
Motif
Other DBs
NCBI-GeneID:
128078706
NCBI-ProteinID:
XP_052535159
LinkDB
All DBs
Position
Unknown
AA seq
2942 aa
AA seq
DB search
MSGRLLLLSLLLAPQAAAAQKRSQAVCENVLEADIVFLVDGSSSIGRNNFRAIRTFVEDL
VSPFVHVVGQKAVRFAVVQYSDDPRVEFGFSQHTNGTGIQRAIQQLSYKGGNTRTGAGLR
YVSDNFFGPTQLRPGVPKICILITDGKSQDDAEQPALRLKSLGIKVFAVGIKNADRQELI
RVASLPTDSFFFYVGDFKLLGTLVPLMTRRVCTSSGGTLRTLDGSGHSGPSNLEVLEHGS
DVLRIRWSPASGPVTGYRVQRVPLTGLGQPLAAERQEVSVGPRETSTVLRGLRAGTEYLV
TVIAQYANSVSESVSVRARTQSRGGVQHFHVAEAGPTFLRLSWQPGPEPPQGYILSYAVP
GMPQSEERSLGAGALSATLSNLRPNTEYVVTLRARYAQQPAATASLTARTQAGTEQTLRT
NILSPTSIQVLWTAIREARGYRLEWKRATGLETPRTVSLPSSASTYQLTGLQPGTEYRIT
LYTLYEGGEVATPVTTFQTGVEVPVGAVSDLRLIEDLGRRVRLGWTGVPGATEYKVTVRN
TQDGTERTRRIPGTQTALELGDLREGVTYLVRVSALVGSREGSAAALSIHVKFPAVGSVS
ELRVTEAGPNQLRVTWRGLSGAGGYRLTWRAGDGQEQSRFLPANPTVYTIEGLRAGTVYA
IGVTAIIDGREGPPVTTMGRTAEQVGTVSRLEVQSSRSNVARVTWVGVPGATAYRVVWSR
RDGGSEKSQHVPGHISSFDIPDLEGGVSYTVKVTALIGNHEGNPVSIIVTTPEAAPVPPV
SNLQVMEASEHRLRLTWAPVSGSSGYRLVWRPAEGGPQRSQQLPATASSYDLGGLEPGRR
YHISITSMVGSRESAPVAVTTATAASPSHATSLRVTEVQRDSVTLSWTPVPGASEYVLSW
TPPAAGGEARRVVPGTASSLQIPGLRLGQRYTFTIRPLLGSTPGAESSVSERPVCRDARG
DIVFLVHGTRDSSSGADAVRTLLSNTVTSMGRLGPDGTQVGLATYSYRSLPWLLLNRSSE
LPAVLEQIRTMRYEEPSGNAIGAAITFARTYLLSPGAGRRPSVPAVLVVVADGPSGDDAI
TAARDAKAAGVRVLAVGLEGADQEQLRRMVSGEDPRFVFRNRGALSELEGELTDDLCTII
STRPEPEPKPCTVQCPRGEKGDPGVAGPQGRVGQPGPPGEPGRHGLPGPPGPVGPRGPPG
ESVEQLGKKGDRGFPGADGRPGLPGPPGNPGTPGQPGNQGIPGPRGDPGPRGTAGHPGPK
GEKGEPGEPRVIVDGGQGLPGRKGEPGTPGSTGPPGNPGPRGPFGDPGPPGPLGPMGLPG
PPGDSVKGEKGDRGERGPPGLIDGAVPRGEPGPPGPPGEPGPRGLAGTPGPKGEKGDGEE
GFPGPPGRPGDPGDRGPRGPPGEQGRKGERGAPGELGETGQKGDRGAPGPEGEKGETGAP
GRPGPSGREGVPGPAGPRGEKGDVGAPGEPGQPAPSVASVRGEKGDRGFPGPEGPPGPKG
DVGERGARGVPGLSIPGPTGPKGEQGERGITGLTGRSGPKGDAGEPGEKGEPGRVGAPGQ
PGQRGKEGERGEKGDEGTPGEAGVPGKPGDRGPRGLPGYRGPPGEKGDLGDPGPEGRNGI
PGAPGTKGDRGEPGPPGPPGRAVDVGLGGVGEKGEKGDAGDPGEDGAKGAKGESGPPGLP
GLSGIEGPRGPPGARGDPGDRGLPGEKGERGPPGLDGRNGLEGKPGPPGPTGLRGDPGKQ
GDPGRDGLPGLRGEQGPPGTIGPLGPPGIPGKPGDDGKPGLNGKNGEDGTPGEDGRKGDK
GDAGAPGRDGHNGAKGEQGDRGMPGLPGPPGVPGVPGQVGPPGQGSPGLRGITGPKGDPG
EPGPRGEPGRPGVSGDPGTAVNIERSLEALGIKISSLKELTGAYDGSSDSFLPVSERLRG
QKGSRGEPGERGPPGREGSLGFPGERGPKGDKGDQGAPGPQGPAGRAVGERGPEGPPGQP
GEPGKPGIPGVPGRAGELGEAGRPGEKGDRGEKGDRGEQGRDGLPGLPGPPGPKADAMEG
SLMGFPGERGPPGLKGVKGEPGAEGERGPKGDKGEGGSRGERGEPGEKGRDGSPGLPGER
GLAGPEGKPGLPGFPGVLGRPGNQGEPGPPGPPGAAGPPGSQGPSGMKGDPGEPGAGIRG
LPGPQGSMGLPGPPGPPGLVGPPGAPGLPGQVGESGKPGVPGRDGVPGKDGQPGMPGKLG
VPGPSGPTGPKGEPGDAGAPGQGIAGPPGAKGEKGEPALLEGVLLGEPGSKGARGLPGPK
GEKGEPGGAGEPGDPGEDLCIFAGSQGIIWSQGGKGVGVRGPPGQDGPPGLKGDIGLPGP
PGPPGLVGIAGAPGQPGLRGDSGQPGPPGAPGERGAIGFPGRDGAAGPPGPQGPPGPAGI
QGASGLKGDKGDPGAGLPGARGERGDPGPRGEDGRPGLAGDRGPMGLPGNRGERGDKGDV
GAVGPKGDKGDTVVVEGPAGARGSKGEPGDRGLKGSEGDKGDKGEQGMPGEKGARGEPGE
KGSAGFPGARGPGGQKGEVGVPGEPGEPGLPGRDGIAGARGEKGDMGPLGLRGPKGERGM
KGACGLDGDKGEKGEPGLPGRSGLPGRKGEPGELGLSGAPGIPGKEGLMGPKGDRGFDGQ
QGAKGDQGEKGDRGAPGMIGTPGPRGSDGAPGPPGPPGSVGPRGPEGMQGQKGERGPPGQ
AVMGARGVPGIPGERGEQGSPGAEGLRGEKGDPGMTEEEIRAFVRQEMSQHCACGGQLPR
RLDSREHSGGWGTRPRSILQSAHGGGRSVRQEKEHSQTDHSPHYPPTEPFPDLSAHVVPV
LKVSHAEEEEGQDRRVVVDTNDLEYDSMYGEQEDYDTALDAGSLEQLAEDAEPCHQPMEE
GGCQRYTLRWYYNQRAAECRPFVYSGCQGNLNRFGSQEECELHCRQRVGTGAGSGEGRRP
EA
NT seq
8829 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaggctcttactcctctccctgctcctggccccccaggctgctgctgcacag
aagaggagccaagcggtgtgcgagaacgtgctggaggccgacatcgtcttcctggtggac
ggctcgtccagcattggccggaacaacttccgtgccatccgcaccttcgtggaggacctg
gtgtcaccctttgtgcatgtggtgggccagaaggcggtgcgcttcgccgtggtgcagtac
agcgacgatccacgggtggagtttggcttctcccagcacaccaatggtacaggcatccag
agggccatccagcagctgagctacaagggcggcaacacacggaccggcgctgggctgcgc
tacgtctctgacaacttctttggtcccacacagctccggcctggggtcccaaagatctgc
atcctcatcacggatggcaagtcccaggatgatgctgagcagccggcgctgaggctgaag
agcttgggcatcaaggtctttgctgtagggatcaagaatgccgaccgccaggagctgatc
cgcgtggcctcactgcctactgattccttcttcttctatgtgggtgacttcaagctgctg
gggacactggtgccactgatgacacgcagggtgtgcacaagctcagggggcacgctacgc
acccttgatggatcaggccactctggtccctccaacctggaggtcctggagcacggctcc
gatgtgctgcgcatccgctggagcccggccagcggccccgtcaccggctatagggtgcag
cgtgtcccactgacggggctggggcagccgctggcagctgagcggcaggaggtgagcgtg
ggtccgcgggagacaagcaccgtgctgcgggggctgcgcgcagggacggagtacctggtg
actgtcatcgctcagtatgccaacagcgtcagcgagtcggtgtctgtgcgggcgcgcact
cagagccgtggcggcgtgcagcatttccacgtggctgaggctgggccgaccttcctgagg
ctgtcctggcagcccggccctgagccgccccagggctacatcctcagctacgccgtgcca
ggaatgccccagagtgaagagaggagcctgggggctggcgcgctgtcggccacgctcagc
aacctgcgtcccaacaccgagtatgtggtgacgctgcgggcacgctatgcacagcagcct
gcagccaccgccagcctcaccgcgcggacacaggcaggcacagagcagacgctgcggacc
aacatcctgagccccacgtccattcaggtgctctggactgccatccgtgaggcccgtggt
taccgcctggagtggaaaagagccacagggctggagacccccaggacagtgtcgctgccc
agcagtgccagcacctaccagctgacagggctgcagccaggcactgagtaccgcatcact
ctgtacacgctgtatgaaggtggggaggtggccacccccgtcaccaccttccagacaggt
gtggaggtaccagtgggcgcagtgtcagatctccgtctcatcgaggatttgggcaggagg
gtgcggctgggctggaccggcgtccccggtgccaccgagtacaaagtgacagtgcgcaac
acccaggatggcaccgagaggacgaggcgcatcccaggcacgcagacagcgctggagctg
ggtgacctgcgggaaggtgtcacctacctggtgcgtgtctcagccctcgtgggcagcagg
gagggcagtgctgctgcactcagcatccacgtcaagttcccagctgtgggcagtgtctcg
gagctgcgggtgacagaggccggccccaaccagctgcgggtcacgtggagggggctgtcg
ggtgccggggggtaccggctgacgtggagggccggcgatggtcaggagcagtcccgcttc
ctccctgccaaccccactgtctacaccattgaggggctgcgagccggcactgtttatgcc
atcggtgtcacagccatcattgatggccgcgagggtccccctgtcaccaccatggggagg
acagctgagcaggtggggacagtatcccggctggaggtgcagtcatccaggagcaatgtt
gcccgtgtcacatgggtcggtgtgccaggagccacagcgtaccgtgtggtgtggagccgt
cgggacgggggctcggagaagagccagcatgttcccggccacatcagctcctttgacatc
cctgacctggaaggaggtgtctcctacactgtgaaggtcacagcgctcataggcaaccat
gagggcaaccctgtgtccatcatcgttaccaccccggaggcggccccggtgccccctgtt
agcaacttgcaggtgatggaggcttcggagcatcgcctgcgcctcacatgggcgccggtg
tccggcagcagcgggtaccgcctggtctggcgcccagctgagggtggtccccagcgcagc
cagcagcttccagccaccgccagctcctatgacctgggagggctggagccgggccggcgc
taccacatcagcatcaccagcatggtgggcagccgggagagcgcaccggttgccgtcacc
actgccaccgcagcgtctccaagccatgccaccagcctgcgagtgacagaggtgcagaga
gactctgtgacgctctcctggacccctgtccctggtgcttctgaatacgtcctgtcctgg
accccccctgcagcgggcggcgaggcacggcgcgtggtgccgggcactgccagctcccta
cagatccctgggctgcgcctgggccagcgctacaccttcaccatccgcccgcttctgggg
agcacacctggtgctgagagctccgtcagtgagcggccagtctgcagggacgcccgaggg
gacatcgtgttcctggtgcatggcacacgtgacagctcttctggtgctgacgctgtccgc
acgctcctctctaacactgtcacctccatgggccgcctgggccccgatggcacccaggtg
ggtctggccacgtacagttaccgcagcctgccctggctgcttctcaaccgctccagcgag
ctgcccgccgtgctggagcaaatccgcaccatgcgctacgaggagcccagcggcaatgcc
attggggcagccatcacctttgctaggacctatctgctgagccctggtgcaggacggcgg
cccagtgtgccagcggtgctggtggtggtggccgacggcccctccggggacgatgccatc
actgctgccagggatgccaaggcagcgggggtccgagtgctggctgtgggcttggagggg
gcagaccaggagcagctccggcgcatggtcagtggtgaggacccacgcttcgtcttccgc
aaccgtggtgccctgtcagagctggagggagagctcaccgatgacctctgtaccatcatc
tccaccaggccagagccagagccaaagccctgcactgtgcagtgccccaggggagagaag
ggagaccctggcgtggcagggccacaggggcgtgtggggcagccgggcccccctggagaa
ccgggccgccatggactgcctggccctccaggacctgtgggaccacgagggccaccagga
gagagcgttgagcagctgggcaagaagggggataggggcttccctggagctgatgggcgg
ccagggcttcctggcccccccgggaaccctgggacccctggccagccgggcaaccagggc
attcctggcccccgaggggatcctgggccacgaggaacagcggggcatcctggcccgaag
ggggaaaaaggcgagccgggagagcccagagtgatcgtggatggaggacaggggttgcca
ggacggaaaggggagccaggcacaccgggtagcaccggcccccctggcaaccctggccca
cgaggtccctttggtgacccaggtcctccgggtccccttgggccaatggggctaccagga
cctccaggagactctgtgaagggggagaagggtgatcgaggggagaggggtccccctgga
ctgatcgatggggcagtgcctcgaggggagccgggccccccgggtccacctggggagccc
ggcccacggggacttgctggtactcccggccccaagggtgagaagggtgacggtgaggag
ggattcccagggccacctggacgtccaggggaccctggagaccggggtccacggggacct
ccaggagaacaaggcaggaagggagagcgtggggcaccaggcgagctgggggagacaggc
cagaagggagaccgcggtgcgcctggccctgagggtgaaaagggtgagacaggagctcca
ggacggccagggccatcaggcagagagggagtaccgggaccagctgggccacggggcgag
aagggtgatgtgggagcacctggtgaacctggccagccggctcccagcgtggccagtgtc
agaggagagaagggtgacagaggatttccaggaccagaggggcctcctggccccaagggt
gatgtaggggagaggggtgcccgtggtgtccctggcctgagcatcccaggaccaactggc
cccaaaggcgagcagggcgagcggggcatcactggcctcactggcaggagcggtcccaag
ggtgacgcaggggagccgggtgagaagggtgagccaggcagagtgggtgcaccaggacaa
ccagggcagcgtggcaaggagggtgagcgtggagagaagggtgatgaaggcaccccgggt
gaagcaggggtgcctggcaaacctggagacaggggtccacgggggctgcctgggtaccgt
ggcccccctggagagaagggcgacctcggagacccaggtcctgaaggcagaaacggcatt
cctggagcacctggcaccaagggtgaccgcggggagccgggccctcctggacccccagga
cgagctgtggatgtggggcttggaggagtaggagagaagggtgagaagggggatgctggg
gacccgggcgaggatggagcaaagggggccaagggtgagagtggcccccccggactgccg
gggttgagtggcattgaaggcccccgcggcccccccggcgcacggggtgaccctggggac
cgaggcttgcctggagagaagggggagcgtggcccaccagggctggatggccgcaacgga
ctggaggggaaacctggccccccgggacccaccgggctgaggggggacccagggaagcag
ggggaccctggccgagatgggctgcctgggctgcggggggagcagggaccgcctggcaca
ataggaccgttgggaccacctggtatccctggaaaacccggtgatgatggcaaacctggc
ctaaatggcaagaatggagaagatgggacaccaggagaagatgggagaaagggagacaaa
ggtgatgccggagcccctggcagagatggccacaacggtgctaagggcgagcagggggac
agaggcatgcctggcctccctggcccccctggtgtccctggtgtcccagggcaggttggc
cccccaggccagggctcgcccggccttcgtgggatcactggaccaaagggggacccaggg
gagccaggaccacgaggggagccagggcggcctggtgtcagtggagaccctgggactgca
gtgaacattgaacgtagcctggaagccctcggcatcaagatctcatctctgaaggagctg
acgggtgcctatgatggcagctcagactcctttctgcccgtgtctgaacggctgcggggg
cagaagggcagccggggggagccaggggagaggggtcccccaggccgggagggttcttta
ggcttccctggtgagcgaggacccaaaggtgacaaaggggaccaaggtgcccctggtcct
cagggccccgcaggccgggctgtgggcgagcggggcccagaggggccaccggggcagcca
ggggagccaggcaagccaggcattccaggggtgccaggccgggctggcgagctgggggag
gccgggcgacctggtgagaagggtgaccggggtgagaagggcgaccggggtgagcagggc
agagatggcttgccaggcctcccagggcccccagggcccaaggcagacgcaatggagggc
agcctgatgggcttcccaggcgagcgaggtccccctggacttaagggagtgaagggtgag
cctggtgccgagggcgagcgaggacccaaaggagataagggtgaaggtggatcacggggc
gagcgaggagagcctggcgagaagggcagggatggctctccaggcctcccaggagagagg
ggtctggctggccccgaggggaagccgggcttgccaggtttccccggtgtgctgggccgc
ccgggcaatcagggagagccagggccaccaggacctccgggtgctgctggcccaccaggg
agccagggtccatctgggatgaagggtgatccaggggaacctggtgccggcatccgggga
ttgcctggtccgcagggcagcatggggctgcctggccctccaggaccacctggtctggtg
ggccctccgggtgctcctgggctgccaggacaagtgggggagagtggcaagccaggtgtg
cctgggcgagatggtgtgccagggaaggacggccaaccagggatgcctgggaagttgggt
gtgccaggaccgtcaggccctactggccccaaaggggagccaggggatgcgggagcgccg
gggcagggcattgctggccctcctggtgccaagggcgagaagggtgagccggcgctgctg
gagggcgtgctgctgggtgaacctggttccaaaggtgcccgaggtttgcctggccccaag
ggtgagaagggggagcctggaggagctggggagcctggagaccccggcgaagatctctgt
atctttgcagggagccaagggatcatctggagtcaagggggaaaaggtgtcggtgtgcgg
ggaccaccaggacaggatggacctccaggtttgaagggtgacatcggtttgccaggacct
cctggaccaccgggattagtgggcatcgctggggcaccgggacagccaggcctgagaggg
gacagcgggcagcctggcccaccaggagcccctggagaacggggtgcaattggcttccct
gggagggatggtgccgcagggccacctggaccccaagggcccccagggccagcgggcata
caaggggcctcagggctgaagggtgacaagggtgacccaggggctgggctgccaggagcc
agaggtgaacgtggagacccaggaccacggggtgaagatgggcgcccagggctggcaggc
gaccgtgggccaatgggcttgcctgggaaccgaggggagcgtggggacaagggagacgtc
ggggccgtggggcccaaaggagacaagggcgataccgttgtggtggaggggcctgctggg
gcgagaggcagcaagggggagccgggagaccgtggcctaaagggctccgaaggggacaaa
ggggacaagggggagcagggaatgcccggcgagaagggtgcaaggggtgaaccaggtgag
aagggctctgcaggctttcctggggcacgcggccctggcgggcagaagggagaagttggc
gtgccgggggagcctggtgagccgggtttgcctggtcgggatggcattgctggagcacga
ggagagaagggggacatggggccactgggcttgcgtggtcccaagggtgagcggggcatg
aaaggcgcctgtggcctcgatggggacaagggtgagaagggagagccagggctgccgggg
cgctcggggctgccaggaaggaagggtgagccgggagaactggggttgtctggagcaccc
ggcatccctgggaaggaggggctcatgggacccaagggtgaccgtggcttcgatgggcag
cagggagccaaaggagaccagggggagaaaggagatcggggtgcaccaggcatgatcggt
acccctggtccccggggcagtgatggtgctcccggcccccctggccccccaggcagcgtt
gggccacgaggtcctgagggcatgcagggccagaagggggaaagaggcccccctgggcag
gcagtgatgggggcccgcggtgtgcctggtatccctggtgagcgaggagagcagggcagt
cctggtgctgagggactccgtggggagaagggggatccgggcatgacggaggaagagatc
cgcgccttcgtcaggcaggagatgagccagcactgtgcatgtggagggcagctcccgcgg
cgcttggattcccgtgagcactcaggaggatgggggactcggcccaggagcatccttcag
tctgcccatggaggagggagaagtgtccgccaagagaaggagcacagccaaacagatcac
tccccccattacccacccactgagccattcccagatctcagtgctcatgttgtccccgtg
cttaaagtgtcgcatgcagaagaggaggaggggcaggacaggcgtgttgtcgttgacacc
aatgacctggagtacgacagcatgtatggtgagcaggaggactacgacacagctctggat
gcaggcagcttggagcagctcgcagaggatgccgagccctgccaccagcccatggaggag
gggggctgccagcggtacacactgcgctggtactacaaccaaagagccgccgagtgccgg
cccttcgtctacagcggctgccagggcaatctcaaccgcttcggcagccaggaggagtgt
gagctccactgcaggcagcgcgtggggacaggtgctggcagcggggaaggacggcggccg
gaggcgtag
DBGET
integrated database retrieval system
