Tympanuchus pallidicinctus (lesser prairie-chicken): 128078852
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Entry
128078852 CDS
T08967
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128078852 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128078852 (PARN)
Enzymes [BR:
tpai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128078852 (PARN)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128078852 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
128078852
NCBI-ProteinID:
XP_052535429
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEVIRSNFKDNLSKVYEAVEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVAIPEDQRKF
IDKIVEQIEEFLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESEKKERYIV
ISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKDIISNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLQGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPDQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKRAKRKCTEDSWKEMERKRLK
TQGAPYVSQSRYYCVNSFTGTSVAGKRSMSPIQEETGSDNLEEEGVPEDETNCYAESPPD
VPKKVQKAKRFKKIKREQVSAGSLTSNSTEIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcagaagcaattttaaggataacctaagcaaagtgtatgaagctgtcgaa
gaagcggacttcctggccattgatggggagttctcagggatcagcgatgggccttctgtt
agtgcattaaccaatggctttgacacaccagaagaacggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgaccacacagaa
gagaagtatattatgaagtcatttaatttctatatttttccaaaaccctttaacagaagt
tcaccggatgtcaagtttgtctgtcagagttcaagcatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaattccatatttaaatcaggaagaggaaaga
cagttaagagaacagtatgatgaaaagcgttctcaggccaatggtgcaggatctctctcc
tatatttctcctaatgccacaaagtgtcctgttgcaattcctgaagatcagagaaaattc
attgataaaatagtggaacaaatagaagaatttttaaagaatgaagaaaatgaaagtttg
gaactggagccatgtacagggtttcagaggaaattaatttaccagaccttgagctggaag
tatccaaaaggtatccacgttgaaactctagagtcagagaagaaggagagatatattgtt
atcagtaaggtagatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaggaa
caggaagaactgaatgatgcagtaggattttccagagttgttcatgccattgcaaattct
ggcaaacttgttattgggcacaacatgctgctagatgttatgcatactatacatcagttc
tattgtcctctacctgatgacctaagtgaattcaaggaagtaacgtcatgtgtgtttccc
cggctattggatacaaaactgatggcaagtacgcagccttttaaggacatcattagtaat
acatcccttgcagaactggaaaagcgcttgaaagaggttccgttcagccctcctaaagtt
gaaagtgcagaaggatttccaagttatgacacagcttctgaacaacttcatgaggcggga
tacgatgcttacattactggactgtgcttcatctccatggctaactttttaggttcgttt
cttagtcctccaaaaaatcatgtgtctgctagatcaaaactcatcgaacctttttttaac
aagctatttcttatgagagtaatggacataccatatctgaatttgcaaggaccagacttg
cagccaaaacgagatcatgttcttcacgtcacttttcccaaagagtggaagactagtgac
ctttaccagctttttagtgcctttggtaacattcaggtttcatggattgatgatacgtca
gcgtttgtatcgttgagccagccagaccaagtacaaatagctgtaaacaccagcagatat
gctgaaagttacaggatccagacatacgcagaatatgttgaaaaaaaacatgaagaaaag
cgagcaaaaagaaaatgtacggaagatagttggaaggagatggagagaaaacggttgaaa
actcaaggtgcaccttacgtttcccagagtcgatactactgtgttaacagttttacaggt
accagtgtagcgggaaagagaagtatgagtcctattcaggaagaaactggttctgacaat
ttggaagaggaaggggttccagaagatgagaccaactgctatgcagagtcacctccagat
gttccaaaaaaggttcaaaaagccaaaaggttcaaaaaaatcaagagagaacaagtttcg
gcaggaagcctcacaagtaattccactgaaatttttgaagtccctgaaacatggtag
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