Tympanuchus pallidicinctus (lesser prairie-chicken): 128079329
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Entry
128079329 CDS
T08967
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
128079329 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tpai01001
]
128079329 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tpai04054
]
128079329 (CIITA)
Enzymes [BR:
tpai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
128079329 (CIITA)
Protein kinases [BR:
tpai01001
]
Serine/threonine kinases: Other
TAF1 family
128079329 (CIITA)
Pattern recognition receptors [BR:
tpai04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128079329 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
NB-ARC
LRR_14
LRR_9
nSTAND_NTPase5
NPHP3_N
DUF7086
RsgA_GTPase
nSTAND3
Silic_transp
Motif
Other DBs
NCBI-GeneID:
128079329
NCBI-ProteinID:
XP_052536343
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MDSASVSENGYLDLLLCDIDPVHLFTFSDPKSSGNEGEFFADPEIDTCNYEQFNNMDFLC
TVENDESEDELYLSSSARDAYARIAELAEYVLKDQHEKQVEDAFAGNLILDEMALENTEK
FTDVKKQKCHKRTFLGSAETCSDTSEPKYKKIVDAPAVSTGNGCFLTTSLNSHSSDCTPL
THQHMSFSVPTINALGNFVIPGSSVPLIPESLPLGMKNNRENIDSVDPAQQKINYFLGNG
QSNAIKYPALTSSTELIVSPGFQVNLNVNLSIWIRFPAKISKAESAAIGYLSQVYCHVSG
LEMYKEVQVPVILSEETSRRPRSVEAFCTSLMDYFRDVCKSVSVEREMSLDHMYVDGTLR
QSQIETKPGKNSVKSVEKDSVTNSQQGKEKAVLERNQIFQIPGGKELETKVIVVLGKAGM
GKSILVQKICQDWSNGEFPQFEFVFWFDCKQISLPEKWYSLKDLLLDFFVKPQEGSKEIF
EYLLQNSTKVLLVFDGLEGLHSHENFPHCSASQPNKDLCRMKELLSGLIQKKILNGCTLL
LTARTKEKVCQYVSKVDKTIEIVGFSPRQRELYITKYFEGFPSCDNALNLVKECEYLFSH
CYSPVMCRFVCFLCEAILEMGDQGLPSTLTTLFLKFVQQKIMPTQTDVTDVTLAQNQENL
ATLACIAWYLGEKHQSAMKSDLLPSKKVKEFALKNGFFLPFAFPKHSGTGEEEYGTMFSD
FVIQNFLGALHLILAEGIKDKSLIKYLSFPSKKKKPYNWLHLVPRFLAGLLFLQDDTYFC
SSNKGVKKSTKKQKMLLKYIKRLQINNLCPERLLELLHCIYETQNNYLLQHVALRLKPDL
SFLGTVLTPPDVHVLSSTLKRSRKEFSLDLQNSSIDTHGLKDLVGLKNVTSFRASLSDTI
KLWKYLEQTKDYELLRVSTEKFVLDPFKAKTMKDISDLSDLVEMQEIIINCVQDASSCSS
YEIPAVKNLRKLEFALGPACGLQGFLKLVEILAAFPSLQHLDLDALSENGIGDEGAKSLC
EVFPTLTSLETLNLSQNKITDVGAEKLATALPSLSSLTTLSLYNNSICDFGAENLAKVLP
AMASLRVLDIQYNKITGVGAQQLTDSLRKCPHIKNLVMWNPTIPYGVLEHLQQLDSRISV
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggattcagcatctgtgtctgaaaatggctaccttgatttgctgctttgtgatattgat
ccagtgcatctatttacattctcagaccctaagtcatctggaaatgaaggtgaattcttc
gcagatcctgaaattgatacctgcaactatgaacaattcaataatatggatttcctgtgt
acagtggaaaatgatgaaagtgaggatgaattgtatctctcttccagtgccagagatgct
tatgctagaatagctgaattagcagaatatgtgctcaaggatcagcatgagaagcaagtg
gaagatgcttttgcagggaaccttattttggatgaaatggctcttgaaaacactgagaaa
ttcactgacgtaaagaagcagaaatgtcacaaaagaacctttttaggctctgcagagact
tgttctgatacttcagaacctaaatacaagaaaattgtggatgcccctgcagtatcaaca
gggaatggatgtttccttacgacgtctctcaacagccattcatctgactgcaccccacta
actcaccagcacatgtccttttctgttcccactatcaatgcactgggaaattttgtaatt
cctgggtcttcagtacctttgattccagagagtctgccacttggcatgaaaaacaacaga
gagaacatagactctgtggatcctgctcagcagaaaattaattattttcttggaaatggt
caatctaatgctataaaatatccagcactgacttcctccactgaattaatagtatctcca
ggttttcaagttaatttaaatgtgaacttgagcatttggattcgttttcctgctaaaatt
agtaaagctgaatcagcagctattggatatctttctcaagtatattgtcatgtttcaggc
ttagaaatgtacaaagaagtccaagttccagtaattctttctgaagaaacttcaagaaga
ccaaggtcagtggaagctttctgtacatcgcttatggattacttccgagacgtgtgcaaa
tctgtgtctgtggagcgtgaaatgtctcttgatcacatgtatgttgatggtacacttagg
caaagccaaattgaaaccaagcctgggaagaacagtgtaaaatcagtggaaaaggattcg
gtaactaatagtcagcaagggaaggaaaaggcagtccttgaaagaaaccaaatatttcaa
atcccaggaggcaaagagttagagactaaagtgattgtggtgctgggaaaagcaggaatg
ggcaaaagcattcttgttcagaagatctgccaggactggtccaatggagagtttcctcag
tttgaatttgtcttttggtttgactgcaaacaaataagcttgcctgagaagtggtacagc
ttgaaggatctacttcttgacttttttgtgaaacctcaggaaggaagcaaagagatcttt
gagtatttacttcagaattctactaaagtccttctggtttttgatggtttggaagggttg
cacagccatgagaattttcctcattgttcagccagtcagcctaacaaagacttgtgccgc
atgaaggagctgctttcaggactcatccaaaagaagatactcaatggctgtactttatta
cttacagcaagaacaaaagaaaaggtgtgccagtatgtgtccaaagtggataagactatt
gaaatagtaggattctcccctcggcagagagaactgtacataaccaaatactttgaagga
ttcccctcgtgcgacaatgcactgaatttagtcaaagagtgtgagtacctcttcagtcat
tgttacagccctgttatgtgtagatttgtttgttttctctgtgaggcaatacttgaaatg
ggagaccaaggccttccttcaactcttactacactcttcctgaaatttgttcagcaaaaa
ataatgcctacgcaaacagatgttacagatgttacacttgcacaaaaccaagagaatctt
gctacgctagcctgtatagcctggtatcttggagaaaagcaccaaagtgccatgaaaagt
gaccttcttccttctaagaaagttaaagagtttgctctgaaaaatggatttttcctgcca
tttgcattccccaaacattcaggtacaggagaagaggaatatgggaccatgttctccgat
tttgtcattcagaatttcttgggtgcacttcaccttatattagcagaaggcatcaaggac
aaaagtttaataaagtatctgtcttttccatccaaaaagaagaaaccttataactggtta
catttagtgcctcgatttttggctggattgttattcctccaggatgacacctacttctgc
tcttcaaacaagggtgtaaaaaaatcaaccaagaaacagaaaatgctcctgaaatatatt
aaaaggttgcaaataaacaacctctgtccagagaggttacttgagcttttgcactgtatt
tatgaaacacaaaacaattatctcttgcagcatgtggccttaaggctcaagccagacctg
tcctttctgggcactgttcttacaccaccagatgtccatgtactgtcctctactttaaaa
aggtcaagaaaagagttttccttggatttgcagaacagcagtattgacacgcacgggcta
aaagacttggttggcctgaagaatgtgacatcattcagggcctccctcagtgatacaatc
aagctatggaaatatttagaacagacaaaagactatgaactgctgagagtgtcaacagaa
aaatttgttcttgatccctttaaggcaaagacaatgaaagacatcagtgacctttctgac
ctcgtagaaatgcaggagataataatcaattgtgttcaagatgcctccagttgcagcagc
tatgaaattcctgccgtaaaaaacctgagaaaactagaatttgctctgggtccagcgtgt
ggccttcagggattcctaaaactcgtggaaattctggcagcatttccatcactgcagcat
ttagaccttgatgctctgagtgaaaatggcataggagatgaaggagcaaagagtctgtgt
gaagtctttccaacactgacatcactggaaacattaaacttgtcacagaataagataaca
gatgtgggtgcagagaaactagctacagctcttccctccttgtcttcattaacaacacta
agcttatacaacaatagcatttgtgattttggagcagaaaaccttgcaaaagtccttcct
gcaatggcttctttaagagtgctagacattcagtacaacaaaataactggtgtaggagcc
caacagctgactgacagcctaagaaaatgtccccatattaaaaatttggtgatgtggaat
cctacgattccatatggagttcttgaacaccttcagcagctggactctaggatcagtgtg
tag
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integrated database retrieval system
