Tympanuchus pallidicinctus (lesser prairie-chicken): 128079378
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Entry
128079378 CDS
T08967
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03430
Mismatch repair
tpai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128079378 (PMS2)
03460 Fanconi anemia pathway
128079378 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128079378 (PMS2)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
128079378 (PMS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
128079378
NCBI-ProteinID:
XP_052536478
LinkDB
All DBs
Position
Unknown
AA seq
869 aa
AA seq
DB search
MEAAEPCSEPAEAIRRIDRESVHRICSGQVVLSLGTAVKELVENSLDAGATSIDVRLKDH
GAELIEVSDNGGGVEEENFAGLTLKHYTSKIQDFSDLTHVETFGFRGEALSSLCALSDVS
ISTCHKSAKLGTRLVFDHNGKITQRAPHPRQRGTTVSIQQLFHTLPVRHKEFQRNIKKEY
AKMVQILQAYCIISEGVRINCTNQVGQGKKSPVVSTAGGLNLKENIGAVFGKKQLQSLIP
FVQLPPNEAVCEEYGLKSTDLPEKLYSITGFISRCDHGVGRSTTDRQFFFINQRPCDPAK
VVKLVNEVYHLYNKHQYPFIVLNICVDSECVDINVTPDKRQILLQEEKLLLAILKTSLME
MFGSDVNKLNVNQNLLDIAGNLKVPHGDTEKPWVEMSHGSETESPSSEGKRAMTLSRLRE
SFSLHQSESYFQSPKKVKQRHSSTKQLSLDTILSTVRTGKAVLSEDSESCRETKSKMSVP
RRYLREVEENTDSGFSSTSGSDAGYDTPEAGSCVIGETVNNPVEEEFCSSEQHQSECRKT
DGRGEKSLEGDIQVSGTEHKLNGVNDWNKQSNLPQEASNSSPRVKCFRSEADGFKAAVHP
EVKNTRNSMPCVDVLVEVKKKTVPLEFSMKALAERVRKIVQQQQKCTETQNYRRFRAKIS
PGENKVAEDELRKEISKDMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDEKYNFEMLQ
QHTVLQGQKLIVPQNLNLTAVNETVLIENLEIFRKNGFDFVINENAPVTQRVKLISLPTS
KNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNVQEMKKLVTH
MGEIEHPWNCPHGRPTMRHIASLDLIAAE
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggccgagccctgctcggagcccgccgaggccatcaggcgcatcgaccgcgag
tccgtgcaccggatctgctcggggcaggtggtgctgagcctgggcacggccgtgaaggaa
ctggtggagaacagcctggacgccggagcgaccagcatcgatgtaagacttaaagaccac
ggggcggagctgatagaggtttcggataatggaggtggagtggaagaggaaaactttgca
ggattaactctgaaacattatacgtcaaagatacaagatttttctgatctaacacacgtt
gaaacgtttgggtttcgaggtgaagctctcagttcattgtgtgcattaagtgacgttagc
atttctacttgccataagtctgcaaagcttgggactcgtttggtgtttgatcacaatggt
aagatcacccagagagctcctcatccacggcagcgaggaacaactgtgagcatacagcag
ttatttcacactttgccagtgcggcataaggagtttcagaggaacatcaaaaaggaatat
gcaaaaatggtccagatactgcaagcatactgtattatttcagaaggagtgcggattaat
tgcaccaatcaagttggccaaggaaaaaagagccctgtggtatccactgctggaggtctg
aacttaaaggaaaacattggagcagtatttgggaaaaaacagttgcagagcctgattcct
tttgttcagctgcctcccaatgaagctgtttgtgaagaatatggactcaaatctacagac
ctcccagaaaagctttatagtatcacgggcttcatttctcgctgtgatcatggcgttggg
aggagcacaacagacaggcagttcttcttcatcaaccagcgtccgtgcgatccagcaaag
gttgtcaagcttgtgaatgaagtttatcacttatacaacaaacaccagtatccttttatt
gtccttaacatttgtgtagattctgaatgtgttgacatcaatgtgactccagacaagaga
caaattttgcttcaggaagaaaagcttttattggcaattttaaaaacttctctgatggag
atgtttggtagtgatgttaacaaactgaatgtcaatcagaatcttctggacattgcaggc
aacctgaaggtccctcatggagacacagaaaagccctgggtagaaatgtcacatggctcc
gagactgaaagtccaagcagcgaaggaaaaagagcgatgactctttccaggttaagggag
tcgttctctctgcatcaaagtgagagttatttccaaagcccaaaaaaggtaaaacagaga
cacagctccactaaacaactgtcacttgataccattttgagtactgtgaggactggaaag
gctgttttgagtgaagattctgagagttgtcgtgagaccaagtcaaagatgtcagttcca
aggagatatttgagagaagtagaagaaaatacagattctggattcagtagcacttctgga
tcagatgctggatatgacactccagaggctgggagctgtgtcattggtgaaactgtaaat
aatcccgttgaagaagaattctgtagctcagaacagcatcaaagcgagtgtcgtaagact
gatggacgtggtgagaaatcattggaaggtgacattcaggtctcgggcactgaacataaa
ttaaatggagtgaatgactggaataagcagagtaacttacctcaagaagccagtaattct
tcaccaagagtaaaatgttttagaagtgaggcagatggcttcaaggcagctgtacatcct
gaagtgaagaataccagaaactctatgccatgtgttgatgtactggtggaagttaaaaag
aaaaccgtgccgcttgaattctctatgaaagctttagcagaaagggtaagaaagattgta
cagcaacaacagaagtgtacagaaacacaaaattacagaagatttagagcaaaaattagt
cctggagaaaataaagtagcagaagatgaattaagaaaagagatcagtaaagacatgttt
gcaaaaatggaaatcatcggccagttcaatttagggtttataatagccaagttgaattct
gatcttttcataattgaccagcatgctactgatgagaaatacaactttgagatgttacaa
cagcacacggttcttcaaggccagaagctgatagtgcctcaaaaccttaatttaactgct
gtaaatgaaacagtattgattgaaaacctggaaatattcagaaaaaatgggtttgacttt
gtgataaatgaaaatgctcctgttacccagagagttaaattaatatccttgccaacaagc
aaaaactggacatttggtcctcaagacatagatgagctgatcttcatgttaagtgactgc
cctggagtcatgtgtagaccttccagagtcagacagatgtttgcttctcgagcttgcagg
aaatctgtgatgattggaactgctctgaatgtgcaggagatgaaaaaactggttactcac
atgggtgagattgagcatccctggaactgcccccacggaaggcctacgatgaggcacata
gccagtctggacttgatcgcagctgagtga
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