Tympanuchus pallidicinctus (lesser prairie-chicken): 128079654
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Entry
128079654 CDS
T08967
Symbol
GRIN1
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1 isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04020
Calcium signaling pathway
tpai04080
Neuroactive ligand-receptor interaction
tpai04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
128079654 (GRIN1)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
128079654 (GRIN1)
04082 Neuroactive ligand signaling
128079654 (GRIN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tpai04040
]
128079654 (GRIN1)
Ion channels [BR:
tpai04040
]
Ligand-gated channels
Glutamate (ionotropic)
128079654 (GRIN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
DUF6724
Rap-GAP_dimer
Motif
Other DBs
NCBI-GeneID:
128079654
NCBI-ProteinID:
XP_052537018
LinkDB
All DBs
Position
Unknown
AA seq
1070 aa
AA seq
DB search
MSAMRLLLLALLFSSSFARAGCDPKIVNIGAVLSTKKHEQIFREAVNQANKRHGTWKLQL
NATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPAPNDHLTPTPVSYTAGFYRIPVIG
LTTRMSIYSDKSIHLSFLRTVPPYSHQANVWFEMMRVFNWNHVILIVSDDHEGRAAQKKL
ETLLEERESKSKKRNYENLDQLSYDNKRGPKAEKVLQFDPGTKNVTSLLLEAKELEARVI
ILSASEDDAATVYRSAAMLNMTGSGYVWLVGEREISGNALRYAPDGVIGLQLINGKNESA
HISDAVAVVAQAVHDLFEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYSEGVTGRVE
FNEDGDRKFANYSIMNLQNRKLVQVGIYNGSNVLTNDRKIIWPGGETEKPQGYQMSTKLK
IVTIHQEPFVYVKPTQADGTCREEFTINGDPVKKVFCTGPNETIPGRPTVALCCYGFCID
LLIRLAGVMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINN
ERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLD
RFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAM
IIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST
MYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIG
MRKDSPWKQNVSLAILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVA
GGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQRELRRRSKCIPEHALRTS
GIHFGYPRAVAEPDLVTPSPVGKVTLIGTKAIGEESLSAPAAERGRSPRLAAPAPWRLVL
PACANQDRKSGRAEPDPKKKATFRSITSTLASSFKRRRSSKDTPCRMVPQECQRDRLAPW
SQDSPGKLPPHSERPSAHHHPSCTASPRHIIPTAPGGDACVPHRQLLQLE
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccatgcggctgctgctgctcgccctgctcttctcctcctctttcgcacgcgcc
ggctgtgaccccaagatcgtcaatatcggcgcggtgctgagcaccaagaagcacgagcag
atcttccgcgaggcggtgaaccaggccaacaagaggcacggtacctggaagctgcagctc
aacgccacctcggtcacgcacaaacccaacgccattcagatggctctctccgtctgcgag
gacctcatctccagccaggtctatgcaatattagttagtcacccacctgctcccaacgat
cacctaacaccaacacctgtatcatacacagctggcttctacaggatccctgtcattggt
ctgacaacacgcatgtctatatattctgataagagcatccacctgtcctttttgcgcacg
gtcccaccatactctcaccaggccaacgtctggtttgagatgatgagagtcttcaactgg
aatcacgtcattctgatagtcagcgacgaccacgaaggtcgtgctgcacaaaagaagctg
gagaccctcttggaggagagagagtccaagagtaaaaaaaggaactatgaaaacctcgac
caactttcctatgacaacaagcgaggacccaaggcagagaaagtgctgcagtttgacccc
gggaccaaaaacgtgacatcgctgctgctggaggctaaagagctggaggctcgtgtcatc
atcctctccgccagtgaggatgatgcggcaacagtgtacagatcagcagccatgctcaat
atgacgggctccggctacgtgtggctggtgggggaacgggagatttcgggcaatgccctg
cgctacgcccctgatggagtcatcggcttgcagctcatcaatgggaaaaacgagtcagcc
cacataagcgacgcagtggcagtggtggcccaggctgtgcacgacttgtttgagaaggag
aacatcactgacccaccacggggctgtgtgggcaacaccaacatctggaagacggggccc
cttttcaagagggtgttgatgtcctccaagtattcggagggtgtcaccggacgggtagaa
ttcaatgaggacggggacaggaagtttgccaattacagcatcatgaacctgcagaaccgc
aaactggtccaggttgggatttacaacggtagcaatgtcttgaccaacgataggaagata
atctggccagggggagaaactgagaaacctcaaggctatcagatgtcgaccaaattgaag
attgtaacgattcatcaagaaccctttgtatatgtgaagcccacacaagcagatgggacg
tgcagggaggaattcaccatcaatggtgaccctgtcaaaaaggtcttttgtacagggccc
aacgagaccatcccaggccgtcccacagtggcactgtgttgctatggcttctgcatcgac
ctgctcatccgcctggctggtgtgatgaacttcacctacgaggttcatctggtggctgat
ggtaaatttggtacccaagagcgggtgaacaacagcaacaagaaggagtggaatgggatg
atgggggagttgctgagtggccaggcggatatgattgtagctcccctcaccatcaacaat
gagcgggcacagtacatcgagttctccaagcccttcaaataccagggtctcaccatcctt
gtgaagaaggaaatcccccgcagcaccttggattcgttcatgcagcccttccagagtaca
ctgtggttgctggtggggctgtctgtgcatgtggtggcagtgatgctgtaccttctagat
cgattcagcccatttggacggttcaaagtgaacagcgaggaggaggaggaagatgccctg
acactctcctcagccatgtggttctcctggggagtcctgctgaactccggcatcggagaa
ggtgctcctcggagtttttctgctcgtattctgggcatggtgtgggctggctttgctatg
atcattgtggcttcctatactgccaacctggctgccttcctggtgttggaccgtcctgag
gagagaattacaggcatcaatgacccccggctgcgcaacccctccgataagttcatttac
gccacggtgaagcagagctcggtggacatctacttccgacggcaggtggagctgagcacc
atgtaccggcacatggagaaacacaactatgagagcgcagccgaagccatccaggctgtg
cgagacaacaagctccacgccttcatctgggactcggcagtgctggagtttgaagcctcg
cagaagtgtgacctggtgacaacaggggaacttttcttccgctccggctttgggatcggg
atgcgcaaggacagcccgtggaagcagaatgtctcactggccatcctcaagtcccacgag
aacggcttcatggaggatttggacaagacttgggtgaggtatcaggagtgtgattcccgt
agcaatgccccagcaacactcacctttgaaaatatggcaggtgtgtttatgctggtggct
ggaggtattgttgccgggatatttttaatattcatagaaatagcttacaaaaggcataag
gacgcgcggaggaagcagatgcagctggcgtttgcggccgttaatgtgtggaggaaaaac
ctgcagagagaactgagaaggaggagcaaatgtatccccgagcatgctctacgcaccagc
gggatacattttggttacccccgtgcggtagcagagccagacctggtcactccgtccccc
gtcggcaaggtcacactcattggcacgaaagcaattggggaggaatcgttgtcagcgccc
gccgccgagcgcggccggtccccacggctcgctgcccccgcaccgtggcggctggtgctc
ccagcctgcgccaaccaggatagaaaaagtggtagagcagaacctgaccctaaaaagaaa
gccacttttaggtccatcacctccaccctggcctccagcttcaagagacgtaggtcctcc
aaggatacgccctgcagaatggtccctcaggagtgccagagagacaggctggcaccatgg
agccaagacagccccgggaagctgccaccccactctgaacgtcctagcgcccaccatcac
ccgagctgcacagcctctccgcggcacatcatccccaccgccccaggaggagatgcatgt
gttccccataggcagctcctgcaactcgaatag
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