Tympanuchus pallidicinctus (lesser prairie-chicken): 128079723
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Entry
128079723 CDS
T08967
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03013
Nucleocytoplasmic transport
tpai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128079723 (UPF2)
03015 mRNA surveillance pathway
128079723 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128079723 (UPF2)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128079723 (UPF2)
mRNA cycle factors
P-body specific factors
128079723 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
128079723
NCBI-ProteinID:
XP_052537144
LinkDB
All DBs
Position
Unknown
AA seq
1293 aa
AA seq
DB search
MPAERKKSANMDEKESLLNNKEKEFVERRPVSTREKPKDDVKVGVKRETVKIPEDKKKKL
DEDKRKKEDKDRKKKEEDKVKAEEEQKKKEEEEKKKHEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQSAPDSRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADILD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVPAI
LFKDNEKCSQSKDSSKDESRDSKDAKDNKEAAPGGEDLELELENLDINDDPLELDCGDEA
EDLTKKLLDEQGKREGADSTGADSSDGKQAERKQEDEEASTGSHLKLIVDAFLQQLPNCV
NRDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAED
LCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHH
IEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPP
AEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDTEVKDYVICCMINIWNV
KYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELY
NYRMVESAVIFRTLYSFTSFGVNPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSK
RKLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKIKLCSSLEEAIRQ
VQDLEREFLIKLGLVNDKDSKDTITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEE
GSDNEEEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDK
MMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGSGEGESESGDTMPFVMLTRKGN
KQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRP
APANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagtcagcaaatatggatgaaaaagaatctctgctaaataat
aaggaaaaagaatttgttgaaaggcgaccggtgagcaccagggagaagccaaaggatgat
gtcaaagttggggtaaagagagagactgtaaagattcctgaagacaaaaagaaaaaattg
gatgaggataaaagaaaaaaagaagacaaagacaggaagaaaaaggaagaggataaagtg
aaggcagaagaagagcaaaagaagaaagaagaggaagaaaaaaagaaacatgaagaggaa
gagaaaaagaagcaagaagaggaagttaaacgtcaacaagaagaagcagctgctcagctg
aaagaaaaagaggaagcacaccagttgcatcaggaggcctgggagcgccatcaggcaagg
aaggagcttcgcagcaaaaaccagagtgcgccagacagtcgccccgaggaaaacttcttc
agcagattagactccagtctgaagaagaacacagcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccacgattttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaagccaaactgaaaatatcggatgtgaactgc
gctgtgcacttgtgttctctctttcaccagcgctatgctgattttgccccttcattgctt
caggcttggaaaaagcattttgaagcaaggaaagaagagaagactcccaacattacaaag
ctaagaactgacttgcgtttcattgcagaattgactatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcaacttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggtgatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggagtactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcattcttcactccaagggtgagctgagtgaagatcgacacaagcaatatgaggaa
tttgcgatgtcttatcagaaactgttggcaaattctcagtctctagctgacatcctggat
gaaaatatgcctgaccttccccaggacaaaccaacacctgaggaacatggacctggcatt
gatattttcacaccaggaaagcctggagaatatgacctggaagggggtatctgggaagat
gaggatgctagaaacttctatgagaacctcgttgacttgaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaagtgttctcagagcaaggattccagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcagctcctgggggtgaggatttggagttg
gagctggagaacctggatattaacgatgatccactggaactggactgtggagatgaagcg
gaagatcttacaaaaaagcttcttgatgaacaaggcaagagagagggagcagatagcacc
ggagctgacagtagtgacggaaaacaagctgaaagaaaacaagaggatgaagaagccagt
actggatctcatttaaaacttatagttgatgcttttcttcagcagcttccaaactgtgtg
aacagagacctcatagacaaggcagccatggatttttgcatgaatatgaatacaaaagcc
aacagaagaaaactagtacgagcacttttcatagttcctaggcaaaggttggatttgcta
ccgttttatgcaaggctggttgccacattgcatccctgtatgtctgatgtagcagaggat
ctttgctccatgctaaaaggagatttcagatttcatgtaagaaaaaaggaccagatcaac
attgaaacaaagaataaaactgtgaggtttattggtgagcttaccaagtttaagatgttc
tccaaaaatgatactcttcactgcttaaagatgcttctgtcagacttttctcatcaccat
attgaaatggcctgtactctgttggaaacctgtggaagatttctctttagatcaccagaa
tctcacttaagaaccagtgttcttctggaacaaatgatgagaaaaaaacaagcaatgcat
cttgatgcacgctatgttacaatggtagagaacgcctattattactgtaatccccctcca
gctgaaaaaactgtgaagaagaaacgtcctcccttgcaggaatatgttcgtaagcttctt
tacaaggatctctcaaaggtcaccacagagaaggtcctgagacagatgcgcaaactgcct
tggcaggatacagaagtaaaagactatgtcatatgctgcatgatcaacatctggaatgtg
aaatataatagcattcactgtgtggccaacctcttagcagggttggtcctttaccaggaa
gatgttggaattcatgttgtggatggagtgctagaggatattcgtctaggaatggaggtt
aaccagccaaagtttaaccagcggcggatcagcagtgccaagtttttgggggagctttac
aactaccgcatggtggaatcagctgtaatatttcgaactctgtattcattcacatcattt
ggtgtgaaccctgatggtagtcctagtccactggatcctccagagcatcttttcagaatc
agacttgtgtgtacaatccttgatacctgtgggcaatattttgacagaggatccagcaaa
cgaaagcttgattgcttccttgtatactttcagcggtacgtttggtggaagaaaagtctg
gatgtctggacaaaagaccacccgtttcctatagacattgactatatgattagtgataca
ctggaactcctcagaccaaagataaagctctgcagctctctggaagaagctatcagacag
gtgcaagacttggaacgagaattcttaataaaactaggtcttgtgaatgacaaagattcc
aaagataccattacagaaggggagaatctggaagaggatgaagaagaagaagaaggtgga
gcagaaacagaggagcaatctggaaatgaaagtgaagtcaatgagccagaagaagaggag
ggctctgacaatgaggaggaggaaggtgaagaagaggaggaagaaaacactgattatctt
acagattctaataaagaaaatgaaacggatgaggaaaatacagaagtaatgattaaagga
ggaggacttaaacacgtcccttgtgcagaagatgaggacttcattcaggcgttagataaa
atgatgttggaaaatcttcagcaacggagtggtgaatcggttaaagtgcatcagctggat
gttgctattcctctgcatctcaaaagccaactgaagaagggtcccccacttggaagtggg
gaaggagagtcagagtctggagacaccatgcccttcgtcatgttaacacgaaaaggcaac
aaacagcagtttaagatcttaaatgtaccgatgtcttcccaacttgctgcaaaccactgg
aaccaacagcaagctgaacaggaggagagaatgcggatgaaaaagctcactttggatatc
aatgaacgccaagaacaagaagactaccaggaaatgttgcagtctctggcacagcgtcca
gctccagcaaacacgaatcgtgaacggcggcctcgttaccagcatccgaagggagcacct
aatgcagatctaatctttaaaactggtgggaggagacgttga
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