Tympanuchus pallidicinctus (lesser prairie-chicken): 128079755
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Entry
128079755 CDS
T08967
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128079755 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpai03041
]
128079755 (PRPF4)
Spliceosome [BR:
tpai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
128079755 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
128079755
NCBI-ProteinID:
XP_052537218
LinkDB
All DBs
Position
Unknown
AA seq
537 aa
AA seq
DB search
MASVRAPVARGGARPAPVRAPAPPEPTKSKPSEEGDAPPAKRAPIFYGSLEEKERERLAK
GESGLLGKEGMKAALEAGNINISSGEVFDLEDHMTERQAEVLAEFERRKRARQINVSTDD
SEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSKEEYQQT
WYHEGPRSLKTARLWLANYSLPRAVKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFC
SQIGDDRPLSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKA
TVSLDKKDVNLASCAADGSVKLWSLESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDH
SWRLWDLEAQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG
HLKEIYGLNFSPNGYHIATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVKFEPNHGNFL
LTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWTAE
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgtgcgggcaccggtggcgcgcggcggggctcggcccgctcctgtgagggcc
cccgcgccgcctgagcccacaaagagcaaaccatcagaggagggcgatgctccccctgcc
aagagagcacccatcttctacggcagcctggaggagaaggagcgggagcggctggcgaag
ggagagtctgggcttctggggaaggaggggatgaaggccgccctcgaggccggcaacatc
aacatcagcagcggtgaggtctttgatttggaggatcacatgaccgagcggcaggcggaa
gtcttggctgagtttgagcgcaggaagcgagcccggcaaatcaacgtctccacggatgac
tctgaagtgaaagcctgcctgcgagccctcggggagcccataacactctttggagaaggt
cctgctgagaggagggagagattaagaaatatcctctcagtggtcggcacagatgcattg
aaaaagacaaggaaagatgacgacagatctaaaaagtctaaagaagagtatcagcaaact
tggtaccatgaaggaccacgtagtctaaaaacagcaaggctgtggcttgctaactattcg
cttcccagggcagtgaagcgtctagaagaagcccggctgctcaaagagattccagaggca
accaggacatcgcagagacaagaactacacaagtccctacgatccttgaataacttctgc
agtcagattggggatgatcgcccgctgtcctactgccacttcagccccaactccaaactc
ctggctactgcctgttggagtggactgtgcaagctgtggtccgtgcctgactgcaacctt
gttcacaccttacgaggacacagcaccaatgtaggagcaatagtcttccatcccaaagcc
accgtctccctcgacaagaaggacgtcaacttggcctcttgtgcagctgatggttctgtc
aaactctggagccttgaaagtgatgagccagtggcagatattgaaggacacagcatgaga
gtggcacgtgtgatgtggcacccctctgggaggttcctgggcactacttgttacgatcac
tcgtggcgcttgtgggacttggaagcccaggaagagatccttcatcaggaggggcacagc
aaaggggtctatgacattgcctttcacacagatgggtctcttgctgggactggtggactg
gatgcttttggccgagtgtgggatttgcgcaccgggcgttgtatcatgtttctggaaggc
cacctgaaggagatctatggacttaacttctccccaaatggataccacattgcaactggc
agtggtgacaatacttgcaaggtatgggacctccgtcagaggaagtgcatctacaccatt
cctgcccatcagaacctggtgactggggtgaaatttgaacccaatcatggtaacttcctg
ttgacgggcgcttacgacaacaccgcaaagatctggactcaccctggctggtcccctctg
aaaacactggctggtcatgagggaaaggtgatgggactggatatctccctcgatgggcag
ctgatagcaacgtgctcctatgacagaaccttcaagttgtggacagcagagtag
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integrated database retrieval system
