Tympanuchus pallidicinctus (lesser prairie-chicken): 128079823
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Entry
128079823 CDS
T08967
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128079823 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpai03021
]
128079823 (POLR1A)
Enzymes [BR:
tpai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128079823 (POLR1A)
Transcription machinery [BR:
tpai03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
128079823 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
128079823
NCBI-ProteinID:
XP_052537326
LinkDB
All DBs
Position
Unknown
AA seq
1711 aa
AA seq
DB search
MRPPKVVPWWRFAKVSFGLYTAEEIRKLSVKAITNPQYLDNVGNPSVNGLYDLALGPPDS
KEACATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLL
LSQLKVLEHGLLHAVHDLEVILNRFLEQSADATALEIEEELNRHVDEILQSQELSDQCSN
VKNVCECRNKLISQFWKAHMTSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVFHKAGEEGV
VDEPVAIDETQLGKRGYLTPMTAKEFVLALWKNEGFFLRYLFPGMDPHKDSAFSPDMFFL
DLLVVPPSRYRPVNRVGDRMFTNGQTVNLQAVMKDATLIRKLLVFMAKEQCQPIKIVEDK
IQTETGESDEPLDRSVLATIPGQTIADKLYNAWIRLQTHVNIVFDSDMDKLMTEKYPGIR
QLLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVK
ELRQAVINGPKVHPGASMVINEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQSGLKIVC
RHIKSGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFP
QNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTTRGCFFTREQYMELVYR
GLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENYVPLNLTGKAKIGGKAWMKG
PASRCLNLDSMCESQVIIRGGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCL
GRLFTAFLQLYRGFTMGIEDILVKPEADRKRHKIIRKSNQCGIEVVRAALNLPETASCED
VQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSG
AKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKP
SEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGE
DGLDIPKTQFLQPEQFPFIADNYEVIQKTNHLNEALARMELHQAKQQFKAIRKWWARHQN
PVQREGGFLLFSQKKMASVKTQISGGESKNGRDPATLQLLKMWYELDEKKRRKYLKKANK
CPDPSLAVWRPDCYFASVSETFENGVEDYINKRECEKGGGCMQPALSSDRLKDLLYLKWQ
RSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKT
PMMSVPVLSTKKAHKKVKQLKKQLTRVCLAEVLQKVELEESLHLKNKENSHRLYKIKFCF
LPHEYYGEEKCVKPRDILHFMETRFFKIFLEAIKRKRAKMSSFTEVSTRKATRRDVEDVG
DKAQNNQEAPEGEEEEKIVDAEPDEGDGDATEAKMRRNQEEEVDYESEEENGEENAAENP
EDEEGESEKEERAQDADEEDQNGADGDDSPHLSFMSQTKKERAQLLKSAEVRVNAVLNSH
PSIQEYTFDTENELWCEVSLTLPLMKVYFDISSLLLSLTRNTVIHEVKGITRCLLNESTN
EKGEKELILHTEGINLAELFRYADILDLNRLYSNDIHAMAKNYGIESALRVLIKEIKDVF
AVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGIQSSSSPLQQMTFETSYKFLKEATMMGA
YDELRSPSACLVLGKVVKGGTGLFDLKQPLT
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgccgaaagtggtgccgtggtggcggttcgccaaggtctccttcgggttgtac
accgccgaggagatcaggaaactgagtgtaaaagctataacgaatcctcagtatttggat
aatgtggggaatccttctgttaatggattgtacgacctggctctggggcctcctgattcc
aaagaagcatgtgcaacgtgcatgcagaacttcagcaactgcccagggcactttggccat
atagaactgcctctgactgtctacaaccctctgttttttgataaactataccttctaatt
cgaggttcttgtttaaattgtcacatgctgacatgtactcgagctgtggttcatttgctg
ctaagtcagctgaaggttctggagcatgggttgcttcatgctgtgcatgatcttgaagtc
atcttaaacaggtttttagagcaaagtgcagatgcgacagctctagaaattgaagaagaa
ttaaatcgccatgttgatgaaatattgcaaagtcaagaactgagtgatcagtgttcaaat
gtaaaaaatgtttgtgagtgtagaaataaattgatatcccagttctggaaagcacatatg
acttcaaagaaatgcccaaactgcaaatcaaggagatcactggtgaggaaagagcataac
agcaagctgacagtaacttatccttctacagtgtttcataaggcaggagaggaaggtgtt
gtggatgaaccagtagctattgatgaaactcagttagggaagagaggatacctgacacca
atgactgccaaggaattcgtcttggctctgtggaagaatgaaggtttctttctgcgttac
ctcttccctgggatggatccccataaggactcagctttcagcccggatatgtttttctta
gatctgcttgtggttcctccttcaaggtatcgtcctgtaaatcgtgttggagaccggatg
tttacaaatggtcagactgtgaacctgcaggctgtcatgaaagatgccaccctgatcagg
aagctcttggttttcatggcaaaagaacaatgccagccaattaaaattgtagaagacaaa
attcaaacggagacaggggagagtgatgagcctctggaccgttctgtgctggcaacaatt
ccaggacagaccattgcagacaaactttataacgcttggattcgtcttcagacccacgtc
aacattgtgtttgacagtgacatggacaaactaatgactgagaaataccctggtattcgt
cagctattagagaaaaaggaaggactgttccgcaagcacatgatgggaaaacgtgtggat
tttgcagctcggtcggtcatttgccctgatatgtacattggtaccaatgagattggcatt
cccatggtatttgctaccaaactgacctaccctcagccagtcactccctggaatgtcaaa
gaactgaggcaggctgtcataaatggcccaaaggttcaccctggggcttccatggtcatt
aatgaagatgggtctcgtacagtgctgagtgcaagcagcttgacccagagagaagccata
gccaagcagctcctcacgccttcttcaggtgcaccccaatcaggactgaagattgtttgc
cgtcatattaaaagtggagatgtcctgttactgaaccgccagcccactctgcatagaccc
tccatccaagctcaccgggccagaatcctgcctggagagaaggtgctgaggctccactat
gccaactgcaaggcatacaatgctgattttgatggtgatgaaatgaatgcccatttccca
cagaatgagctgggtagagcagaggcctacaccttagcctttactgatgaacagtatcta
gtgccaaaggatggcaaaccacttcctgggttgatccaggaccacatgatttctggagtc
agtatgacaacccggggctgctttttcacaagagagcaatatatggagcttgtttatcga
ggactaacagacaagaaaggaagaattaaaacctttcctcctgccattatgaaaccacaa
cgattatggacagggaagcaggttgtttctacattgttaataaatatcatcccagaaaac
tacgtcccactgaatttgacggggaaagctaagataggtgggaaagcctggatgaaggga
cctgcaagcagatgtctaaatcttgactcaatgtgtgaatctcaggttattattagaggt
ggggaattactttgtggtgtgctggacaaagctcattttggcagctctgcctatggccta
gtccactgctgctatgaaatttatgggggtgaaaccagtggaaaagtgctgacatgtctg
ggacgcctctttactgcttttctgcagctctacagggggtttacaatggggattgaagat
atcttggttaaacctgaagcagaccgcaaaagacacaaaatcatcagaaaatcaaaccag
tgtggtattgaagttgttagagcagctcttaatttgccagaaacagcatcatgtgaagat
gtacaggggaaatggcaggatgcccatctctgcaaagaccagagagattttaacatggtt
gacctgaaattcaaggaggaagtaaacaattacaacaatgaagttaacaaggtttgcatg
ccatttggtctgcataggagctttccagagaacaatttgcaattgatggtacaatcagga
gccaaaggatccactgtaaatacagtacagatttcttgtttgctgggccagatcgagttg
gaaggtcgaaggcccccgctgatggcatctggcaaatctctgccgtgtttccaaccttac
gatttttcccctagctcaggaggatttgtgactggcagatttctcactgggatcaaacct
tctgaattcttctttcactgcatggctggcagggaaggtcttgtggatacagctgtcaaa
accagccgttctgggtacctgcagaggtgtatcataaagcatttggaagggctggtggtt
cagtatgacctgactgtacgggacagcgatggcagtgtggtgcaatttctgtatggagaa
gatgggcttgatatccctaaaactcagttcttacaacctgagcagtttcctttcattgct
gataactatgaggtgatccagaagacaaatcatctgaacgaagccttagcaaggatggag
ttgcaccaagcgaagcagcagtttaaagccatcagaaagtggtgggccaggcaccaaaac
cctgtgcagagagaaggaggttttctgttgttttctcaaaagaaaatggcgagtgtaaag
acacaaatctcaggaggagaaagcaaaaatggaagagatcctgctactttacagttattg
aagatgtggtatgaactagatgagaagaaacgaagaaagtatctaaagaaggcaaataag
tgtcctgacccaagtctcgctgtttggcgtccagattgctactttgcatctgtttcagaa
acatttgaaaatggagtggaagattatatcaacaaacgagaatgtgagaagggaggaggt
tgcatgcaaccagcactttcttctgatagattaaaggatttgttatatttgaagtggcaa
cggtctctttgtgacccaggagaagctgtgggtcttcttgcagctcagagtattggggag
ccttccacacagatgactctgaacaccttccattttgctggcagaggtgaaatgaatgtc
acgttgggtattccaaggttgcgggagatcttgatggtagccagtgcaaatattaaaaca
ccaatgatgagtgttcctgtgctcagtaccaagaaagctcacaagaaggtgaaacagctc
aagaaacagctcacaagagtgtgcttagctgaggtattgcagaaagttgagttagaggaa
tccctgcacttaaagaacaaagagaacagccatcgcctctacaaaatcaaattctgcttc
ttgccccatgaatattatggagaggagaagtgtgtgaagcccagggacatcttgcacttc
atggaaacaaggttctttaaaattttcttagaagccattaaaaggaagcgtgcaaaaatg
tcatcttttactgaagtcagtacccgcaaagcgactcgtagagatgtggaagatgttgga
gacaaggcacaaaataatcaagaagctccagaaggtgaggaagaagaaaagattgttgat
gcagaacctgatgaaggggatggcgatgctacagaagcaaaaatgaggaggaaccaggaa
gaagaggttgattatgagagtgaagaagagaatggggaagaaaatgctgctgagaatccc
gaagatgaagagggtgaatcagaaaaggaagagagggcccaagatgctgatgaagaagat
caaaatggagcagatggtgatgattctccacatctttcctttatgtctcagactaaaaaa
gagagagctcaattacttaagtcagcagaggtgcgagtgaatgcagttctgaacagtcac
ccatctatacaggagtacacgtttgacactgaaaatgaactttggtgtgaggtttctttg
actcttccattgatgaaggtgtactttgatatctcctctttgcttctttctctcacacga
aacacagtcatacatgaagtgaaagggatcacacgatgcctgttgaatgaaagtaccaat
gagaaaggagagaaagaacttattctgcacactgaagggataaatcttgcagagctgttc
agatacgctgatattttggacctgaacagactttactccaatgatattcatgccatggct
aagaattatggtattgagtctgccctgagggtccttataaaggaaataaaagatgtattt
gctgtctatggcattgtggtagaccctcggcacctctcgcttgtggcagactacatgtgt
tttgaaggagtttataaacccatgaatcgttttggaatccagtccagctcctcccctctg
caacaaatgacatttgaaaccagttacaaattcctgaaggaagcaacgatgatgggtgcc
tatgatgaactgagatccccttctgcttgcctggtgcttggaaaagttgttaaaggaggg
actggtttgtttgacctcaagcaaccccttacatag
DBGET
integrated database retrieval system
