Tympanuchus pallidicinctus (lesser prairie-chicken): 128079902
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Entry
128079902 CDS
T08967
Symbol
SYNPO2
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128079902 (SYNPO2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tpai04990
]
128079902 (SYNPO2)
Domain-containing proteins not elsewhere classified [BR:
tpai04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
128079902 (SYNPO2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
Calsarcin
PDZ_2
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
128079902
NCBI-ProteinID:
XP_052537545
LinkDB
All DBs
Position
Unknown
AA seq
1271 aa
AA seq
DB search
MLPNCTRKMGTGDYICIAMSGGAPWGFRLQGGKEQKQPLQIAKVRNKSKAAKAGLCEGDE
VVSINGKPCGDLTYAEVIVLMESLTDVLQMLIKRSSSGINETLSAERENGKHDNVKNEDY
RESTTLQINTAKEIPHGDLCITEIYSETHQGAGESNIHFSEMKQETTQSHRITPKVIGTS
KAHVTDESVFRGKIEERRPGNMVELQLSLSNDGHKSTNAPAVTLLGAEKCTPSGRGLSVQ
EDGTNPVIAIPLSVKEGNIQWSSKVVQFSSSKEVKMIQSAAPSIPRVEVILDCSDREKEA
PKSLAERGCVDSQVEGGQSEAPPSLPSFAISSEGTEQGEDNQHSERDHRPLKHRARHARL
RRSESLSEKQVKEAKSKCKSIALLLTAAPNPNSKGVLMFKKRRQRARKYTLVSYGTGELE
RDEDEGEEGEVEEGDKENTFEVSLLATSESEIDEDFFSDIDNDKKIVTFDWDSGLLEVEK
KTKSGDEMQTLPETTGKGALMFARRRQRMDQITAEQEEMKARTVHAEEQREVTVSENFQK
VSSSAYQTKEEEMLSQQPCISKSYADVNQNDGKIVQQNGFGLAPDTSLSFQSSEAQKATS
LNRTAKPFPFGVQNRAAAPFSPTRNVTSPLSDLPAPPPYCSISPPPEALYRPLSAPAASK
AAPILWSHTEPTERIASRDERIAVPAKRTGILQEAKRRSTSKPMFSFKEAPKVSPNPALL
SLVHNAEGKKGSGAGFESGPEEDYLSLGAEACNFMQSQASKQKAPPPTAPKPSLKVSPAA
GTPVSPVWSPAGASNKAPSFPTPASPQAAYPAPLKSPQYPHSPSANPPNTLNLSGPFKGP
QATLASPNHPAKTPTTPSAGETKPFEMPPEMRGKGAQLFARRHSRMEKYVVDSETVQANM
ARAPSPTPSLPASWKYSSNVRAPPPVAYNPIHSPSYPPAATKPFPKSTAATKNTKRKPKK
GLNALDIMKHQPYQLDASLFTFQPPSNKESLAIKQIPKLPISKQATSLRLPGSASPTNVR
ASSVYSVPAYSSQPSYQSNASTPVNESYTPTGYSAFSKPESTTSSLFTAPRPKFSAKKAG
VIAQERSSGRSLSLPGKPSFISRATSPTSPLIFQPAPDYFSKPDTAADKPVKRLTPWEAA
AKSPLGLVDEAFGPQNMQESIAANVVSAAHRKILPEPPDEWKQKVSYEPPVPSASLALLG
GKQSGVTSARKSTLSVSNATTQAGSQQQYAFCSQRSQTDPDIMSMDSRSDYGLSTADSNY
NPQPRGWRRPT
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctaattgcaccaggaaaatgggcacaggggattatatctgcattgctatgagc
ggaggggcgccttggggctttagattgcaaggtggaaaggagcaaaagcagcctttgcaa
atcgccaaggttcgcaacaaaagcaaagcagctaaggctggcctgtgtgagggggatgag
gtggtgtctatcaatggcaaaccttgtggagacttaacctacgctgaagttatcgttctg
atggaaagcttgactgatgtcctgcagatgcttatcaagagatcctccagtggaataaat
gaaactttgagtgctgaaagagaaaatggaaagcatgataacgtaaaaaatgaggactat
agggagagcactacactgcagattaatacagccaaagagataccccatggagatttgtgc
atcacagagatatacagtgagactcaccagggagcaggagaaagcaacatacacttttct
gaaatgaaacaagagaccacacaaagtcacagaattactcctaaagtgataggcacctcc
aaagcgcatgtgactgatgaatctgttttcagagggaagatagaagaaagaaggccaggc
aatatggttgagttgcagttatccctctcaaatgatggtcacaagagcaccaacgctcct
gctgtgactctcttaggggcagaaaaatgcaccccttcaggaagaggactcagtgtacaa
gaagacgggaccaaccctgtaatcgcaattcccctgagtgtaaaagagggcaacatccag
tggtcaagcaaagtagtccagttttctagtagcaaagaggtcaagatgatccaaagcgca
gctccatctatccccagggtggaggtgatcctagactgttcagacagagaaaaagaagca
cccaagtctctggctgaaagggggtgtgttgattctcaagtggaaggagggcagtcagaa
gcacctccttctctcccctcctttgcaatctcatcagaaggcacagagcagggagaagac
aaccagcactcggaaagggatcacagacctctcaagcacagggcaaggcacgcaagactc
cggagaagtgagagcctgtcagagaagcaggttaaagaagccaaatctaaatgtaaaagt
attgcattgctgctgacggcagctcccaaccccaattccaagggggtgttgatgttcaag
aagcgtcggcaaagggcgaggaaatatactttagtcagctacgggactggggagctggaa
cgtgacgaagacgagggtgaagaaggtgaagttgaagagggagacaaagaaaatactttt
gaagtgagtttacttgcaacaagtgagtcagaaatagatgaagatttcttctctgacatt
gacaacgacaagaagattgtgacatttgattgggacagtggtttacttgaggttgaaaag
aagacaaaaagtggagacgagatgcagacgcttccagagacaacaggtaaaggagccctc
atgtttgccaggagacggcagaggatggatcagattacagccgagcaagaggagatgaag
gcacgcacagtgcatgcagaggaacaaagggaagtcacggtgtcagagaacttccagaaa
gtaagctcctcagcatatcaaacaaaagaggaagaaatgttaagccagcaaccctgcata
agcaaaagctatgcagatgtgaaccagaatgatggtaaaattgtacaacaaaatgggttt
ggcttagcaccagacacaagcctctcttttcagtcttctgaggctcaaaaagcaacatct
ttgaacagaacagctaaacccttccctttcggggttcaaaaccgagcagctgcaccattt
tcacccacgagaaatgtcactagtcctctttcagatttaccagcaccacctccctactgc
tctatcagcccaccaccagaggctttatacagacctctatcagctcctgcagcaagcaaa
gctgcgccaattctctggtcacacacagagccaaccgaacgcatagcatccagagatgag
aggattgcagtgccagccaaaagaactgggatactgcaagaagcaaagagaaggagcaca
tcaaagcctatgttctctttcaaagaagcacccaaagtaagtccaaatcctgccctgttg
tcccttgtacacaatgcagaaggcaaaaaaggttctggagctggttttgagtcaggacct
gaagaagactacctcagtttgggagcagaagcttgcaatttcatgcagagtcaagcatct
aagcaaaaggcccctcctcctactgctccaaagccttccctcaaggtctctcctgctgct
ggtaccccagtttcacccgtttggtcaccagctggggcttctaacaaggctccttctttc
ccaactccagcctcaccgcaggcagcataccctgcaccactcaaatccccacagtaccct
cattctccctctgccaatcctccgaatactctcaacctatcaggtcctttcaaagggcca
caggcaaccctagcgagtccaaaccacccagccaagacaccaaccaccccaagtgctgga
gaaacaaaaccctttgagatgccgccagagatgaggggaaaaggagcacaattatttgcc
agaagacactctcgaatggagaagtatgtggttgattcagagactgtgcaagcaaacatg
gcacgagccccatctccaactccatctttaccagcttcttggaaatattcatctaatgtc
cgagcacctccacctgttgcttataatcccatacatagtccatcttatcctcctgctgcc
accaagcctttccctaagtccactgctgctactaaaaacaccaaaagaaaacctaagaaa
ggtctcaatgctttggatattatgaaacatcaaccttatcaacttgatgcatcgttattt
acttttcaacctcctagtaataaggaaagtctagctattaagcagataccaaagttgccc
atttcaaagcaagctacatccttacgactgcctggttctgcatctcctacaaacgtccgg
gcatcttcagtgtactctgtgccagcctacagttcgcaaccgtcgtaccaatcaaatgcc
tccaccccagtaaatgaatcatatacgccgacaggctattctgcattttctaagccagaa
tccactacatcctctttgtttactgctccgaggccaaaattttcagcaaagaaagctggc
gtcattgcacaggaaagaagcagtggacgttcattgtcacttcctgggaaaccttcattc
atttctcgagccacatctcccacttctcctcttatatttcagcctgcccctgactacttc
agcaagccagacacagcagctgacaagcctgtcaagagactgactccctgggaagcagca
gcaaaatcccctcttggtctagtggatgaagcttttgggccacaaaatatgcaggaatcc
attgctgctaatgtagtatcagctgcacacaggaaaatacttcctgagccgccagatgaa
tggaaacaaaaagtttcttatgagcctccagtcccaagtgctagcctagccttattagga
gggaagcaatcgggtgttacatcagcccgaaaaagcaccctgtctgtgtcaaatgccacc
acacaggctggctctcagcagcagtatgctttctgcagtcagcggtcccaaacagatcct
gatataatgtccatggattccaggtctgactatggcttgtcaacagctgattcaaactac
aatccacagccaaggggatggaggcgtccaacatga
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