Tympanuchus pallidicinctus (lesser prairie-chicken): 128080159
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Entry
128080159 CDS
T08967
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128080159 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128080159 (MSH6)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128080159 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
128080159
NCBI-ProteinID:
XP_052538050
LinkDB
All DBs
Position
Unknown
AA seq
1343 aa
AA seq
DB search
MSRQSTLLRFFPKAQQPRAAATPPPAGGESRCRSSRERNGLEAAAGPAERSKENGKADGA
AAKGRGVSNIYSPGDLVWAKMEGYPWWPCLIYNHPTEGTIVRGKGSSSRIHVQFFDVSPT
RGWVSIKYLRPYKGSSDREVLKGGMFYSTKPEIKKAMELADDAMSKDKPKRLELAVCSEP
SDAEEAEEEEMEQMSGSASGDSDDSNSEEDVKGNKRVPNRGSAIKAKRRRMLDSDSDRDG
SDVEFKPDVKEAASSEEASSGVDENEATDAETDAESIEESPIKVPSKRKRGNVSKPSKRS
SLENEHSEAPKRAAPVSLEAKSKLTLFAAPDNFESQANACSGGTPGFAAWEHEKLEWLQE
GKKKDAHRRRQNDPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYKVGKFYEL
YHMDAVIGVNELGLVFMKGSWAHSGFPETAFGRFSAILVQKGYKVARVEQTETPEMMEAR
CKATAHPTRFDKVVRREICRILTKGTQTYSIIDCDPSENHNKYLLCVKEKEDSSGQRVYG
VCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDTQKILKGSLISCI
QEGLISGSQFWSASKTLKVLLEEEYFKENQNLGNGCVLPSVIKSLTSESDSLGLTPGENS
ELALSALGGIVFYLKKCLIDQELLSLANFEKYVPVDADNAKTASASSFFARTDQRMVLDG
VTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPSSINDRLDAVED
LLAVPAKLTEISEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIAD
FLSALEGFKVMNEIVDAMEEVASDFKSQVLKQLVTRRAKHPDGRFPDLSAELTRWDTAFD
HNQARKTGVITPKAGFDSDYDKALQDIKTVEEDFRAYLNEQRKLLGVKSVLYWGTGKNRY
QMEIPETAISRNLPEEYELKSTRKGYKRYWTKEIERMLAELINAEERRDAALKDCMRRLF
YNFDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNARH
PCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLG
CYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGR
GTATFDGTAIASAVVGELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVENESED
PSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAREFEEKTMSLRIFRFLC
RVVDGATRDASAVGKLSAMLSHL
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccagagcaccctgctccgattcttccccaaggcccagcagccgcgggccgca
gccacccctccgcccgccggtggggagagccgatgccgttcttccagggagcggaacggt
ctcgaggccgccgccgggcccgcggagcgtagcaaggagaatggcaaagcggatggggcg
gccgccaaaggccgcggtgtctccaatatttattctcccggggacttggtctgggccaag
atggaaggctatccctggtggccgtgcctcatctacaaccatcccacggagggaaccatc
gtcagagggaaagggagctcttctcggatccacgtgcagttctttgatgtcagtcccacg
aggggctgggtcagcatcaagtacctgaggccgtacaaaggctcatcagacagagaggtg
ctgaagggaggtatgttttatagtacgaagcctgaaattaaaaaagcaatggagctggca
gatgatgccatgagtaaagataagcctaagcgacttgagctggcagtgtgcagcgaacct
tcagatgctgaggaggcagaggaggaggaaatggagcagatgagtggaagtgcatcaggc
gacagtgatgacagcaacagtgaggaggatgtgaagggcaataagcgagtaccaaacaga
ggtagtgccataaaagccaaaagaagaagaatgctggattcggacagcgatcgtgatggt
tctgatgtagagttcaagcctgatgtgaaagaagcagcaagcagcgaggaagctagtagt
ggggtggatgaaaatgaagctactgatgcagagacagatgcagagagcattgaagaaagt
cctataaaagtcccttctaaacggaagagaggaaacgttagcaagccttctaaaaggagt
agcttagaaaatgaacattctgaagcacccaaaagagcagcaccagtttcgttagaagcc
aagtctaagctgacattgtttgcagcacctgacaattttgagtctcaggcaaacgcctgc
agtggaggcactcctggctttgcagcatgggaacatgagaagcttgagtggctgcaggaa
gggaaaaagaaagatgcacacaggagacgacagaatgaccctgactatgacccatgcacc
ttgtacgtacctgaggactaccttaacaaatgtacgcctggaatgcggaggtggtggcag
ctgaaaagtcaaaactttgatgcggtgatttgctacaaagttggaaaattctatgagttg
tatcacatggatgcagtcatcggtgtgaatgagctgggcctggtatttatgaaaggttca
tgggctcattccggtttcccagaaactgcatttggcaggttctctgctattctggttcag
aagggctacaaggtagcccgtgttgagcaaacagaaactcctgaaatgatggaagcgcgc
tgcaaggcaacggcccaccccaccaggtttgacaaggttgtgcggcgggaaatctgcaga
atccttaccaagggcactcagacctacagcattatagattgcgatccgtcggagaaccac
aacaaataccttctgtgtgttaaggaaaaagaagactcctctggacaacgtgtttatggg
gtctgttttgttgacacgtcagttgggaagttttatgtcggccagttctcagatgaccgg
cactgctcgaggtttaggactttagtggcacattacactcctgtgcaggtcttgtttgag
aaggggaacctgactgtggacactcagaagatactgaaaggctcgctcatttcttgcatt
caggaggggctgatctctggctcccagttctggagtgcatctaaaacactaaaagttctt
cttgaagaagagtatttcaaggagaatcaaaaccttgggaatgggtgtgttctgccctct
gtcatcaaatctctgacttcagagagtgactcgctgggcttaactcctggcgagaacagc
gagttagctttgtcagctcttgggggaattgtcttctatctcaaaaagtgtctgattgat
caggagctgctgtcgctggcaaactttgagaagtatgtccctgtggatgccgataatgca
aaaactgcaagtgccagtagtttctttgccagaactgaccagcgcatggtgctggatgga
gtcactctgatgaatctggaagtcctgcagaatggaaccaacggaaccacggaaggtact
ttgttggagaggattgattcctgttgtacaccgtttgggaagcggctcctgaagcagtgg
ctttgtgctcctctttgtaatccttcatccattaatgatcgtttagatgctgtcgaggac
cttctggcggtgccggctaaactgactgaaattagtgagcatctgaagaaacttcccgac
cttgaaaggctgctcagcaaaattcacagcattggatcgccgcttaaaagtcagaaccat
cctgacagcagggccatcttttatgaagaaattaaatacagcaaaaaaaaaatcgccgac
tttttgtctgcgctggaggggtttaaagtaatgaatgaaattgtcgatgccatggaagag
gttgccagcgacttcaaatctcaagtccttaagcagttagtcacccgcagagccaaacat
ccggacggacgcttcccagacttgagcgcggagcttacaaggtgggatactgctttcgat
cataaccaggctcgcaagacaggagtgattactccaaaggcaggctttgactccgattac
gataaagcactacaggatattaaaactgttgaggaagatttccgtgcgtacctcaacgag
caacgcaaactgctcggagtcaaatccgtgctgtactgggggacgggcaaaaatcggtat
cagatggaaatcccagaaaccgccatatcgcgtaatctgcctgaagaatacgagctgaag
tcaaccaggaagggatacaaacgttactggaccaaggagattgagaggatgctggctgag
ctgatcaacgctgaggagcgaagagacgcggctctgaaagactgcatgaggcgtttgttt
tacaactttgacaagaacagccaggactggcagacagccgtacagtgcatcgctgtgctg
gatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacct
gtaattctactgcctgtggatagtgctcctcccttcctggaactgaaaaatgcacgccat
ccttgcattacaaaaactttctttggggacgattttattcctaatgacatcgtgataggc
agtaaagatgaagatggtggtagtgaagcttcctgtgtgctagtcactggcccaaacatg
ggtggcaaatcaacactcatgagacaggctggtctcctggttataatggctcagctggga
tgctacgtgcctgctgaggtctgcaggctcacacccatcgacagagtatttacacggctc
ggggcctccgacagaatcatgtcaggtgaaagtaccttctttgttgaattaagcgagact
tccagcatcctgcagcatgcaacagagcactccctcgttcttgtggacgaactcggccga
ggcacggctacgtttgacggaacagcgatagcaagtgcagttgttggagaacttgccgag
aacatcaagtgccgcacgctgttctccacgcattaccactccttggtggaggattactcg
ggcagcgcggccgtgcggctcggacacatggcttgtatggtggagaatgagagcgaagat
ccaagccaggaaacaattacatttctgtataagttcattgaaggagcgtgtccaaaaagc
tatggcttcaatgcagccagacttgctgacatcccagaggaagttattcagaaagggcac
agaaaagcaagagagtttgaagaaaagacaatgtcactgcgaatattcaggtttctgtgc
cgggtggtggatggtgccacacgtgatgcgagcgcggtagggaagcttagcgctatgctc
agtcacctctga
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