Tympanuchus pallidicinctus (lesser prairie-chicken): 128080182
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Entry
128080182 CDS
T08967
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128080182 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128080182 (MSH2)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128080182 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
MnmE_helical
Motif
Other DBs
NCBI-GeneID:
128080182
NCBI-ProteinID:
XP_052538089
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MAGGGSMAAEAPREAVWPEGAGAEAGFVRAVLSLLEKPDTTVRFFERGDYYSVHGADARL
AARELFRTRAVIRQLAGAPGNQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKS
VKENDWYLAYKGSPGNLAQFEEVLFANNDMSMAIGVVGVKLSSADGQRVIGVGYVDTTLR
KLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVIQRGGILITDRKKAD
FTTKDIVQDLNRLLKSRKGEQMNSAALPEMEKQVAVSSLSAVIKFLELLSDDSNFGQFEL
TTFDLSQYMVLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLM
DKNRIEERLNLVEAFVADTELRQGLQEDLLRRFPDLNRLAKRFQRQAATLQDCYRMYQAI
NQLPNVVQALEKYEGAHQMLLLAVFITPLNDIRSDFSKFLEMIETTLDMDKVENHEFLVK
ASFDPNLTELREKMNELEENMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEK
VLRNNSKYKITDTQKNGVKFTNSKLSAINEDYIKNREEYEEAQDAIVKEIINIASGYAEP
IQTMNDVIAQLDAIVSFAHVSNAAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFI
PNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILAR
VGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIA
SKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIHVA
ELAAFPKHVIERAREKALELEEFQDIGRPNESEGEPAAKKCYREREEGEKIIQDFLCQVK
ALPLTDMSEEDIKTKLKQLRADVLAKNNSFVNEIISRTKVTP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggcggcagcatggcggccgaggcgccgcgggaagcggtgtggccggagggc
gcgggggccgaggcgggcttcgtgcgcgccgtgctctccctgctcgagaaaccggacacc
accgtgcgcttcttcgagcgcggcgattactactcggtccatggcgcggacgcgcggctg
gccgcccgcgagctgttccgtacgcgggccgtcatccggcagctggcgggcgcgccagga
aatcagaaactggagagtgttgtgctcagtaaaatgaactttgaatcttttgtgagagat
ttgctgttggttcgtcattacagagtggaagtttacaagaataaagcagggagtaaatct
gtcaaagagaacgactggtatttagcatacaagggttctccgggaaatcttgcccagttt
gaggaagttctctttgccaacaatgatatgtcaatggccatcggggttgtgggggtgaag
ctgtcttctgctgatggacaaagagtaataggagtaggatatgtggacactacgctgaga
aaactgagcgtctgtgagttcccagataacgatcagttctcaaaccttgaagccctgctg
gttcagctaggacctaaggagtgtgtgctgccaggaggagacactgcaggagagatgggg
aaactgcggcaggtcattcagagaggaggaatcctgattacagacagaaagaaggcagat
ttcacgacaaaggatattgttcaggatctcaatcgcttgttaaaatccagaaaaggagaa
caaatgaacagtgcagcattgccagagatggaaaagcaggttgctgtttcatctttgtca
gccgttatcaagtttttggagttgctgtcagatgactctaactttggacaattcgaactg
actacttttgatcttagtcagtatatggttctagacaatgcagctgtccaagcactcaac
ctgttccagagttctgtggaaaatgctaataatacacagtctctggctggtttactaaac
aaatgcagaacccctcaagggcaaagactggttaatcagtggatcaaacagccgcttatg
gacaagaatagaattgaagaaaggttgaatttggttgaagcctttgtggcagatactgaa
ctgcgtcagggccttcaagaagaccttctgcgccgcttcccagatcttaaccggctagca
aagaggtttcagagacaagcagcaaccttacaggactgttaccgaatgtatcaagctatt
aaccaactgcctaatgttgtccaagcactagaaaaatatgaaggagctcaccagatgttg
ttattggcagtgtttataacacctcttaatgacatccgctccgacttctcaaaatttctg
gagatgatagaaacaacattggatatggataaggtggagaatcatgagttccttgtaaag
gcttcttttgatcccaacctgacagaattgcgagagaagatgaatgagctggaagaaaac
atgcagaccttattaaagagtgcagccaaagagcttggtttggaagctggtaaaagtatc
aaactggagtcaaattcacagtttggacaccactttcgaattacttgcaaggaggaaaag
gttcttaggaacaattcaaagtacaagataactgatacacagaagaatggtgtgaaattc
acaaacagcaagctgagtgccatcaatgaggattacataaagaacagagaagagtacgaa
gaggctcaggatgcaattgttaaggaaattattaacatcgcttcaggttatgcagagcca
atccagaccatgaatgatgtaatagctcagttagatgcaattgtcagttttgctcacgtg
tcaaatgcagccccagtgccgtatgttcgtcctgtcattctggaaaagggacaaggaagg
attgtgctgaaaggtgccaggcacccttgcatcgaagtgcaagatgaggtggccttcatc
cccaatgatgttacatttgagaagggcaagcagatgttccacattattactggccctaac
atgggtggaaagtcaacgtacatccgacagacaggagtcattgttcttatggcccaaatt
gggtgctttgtaccctgcgactctgcagaaataaccattgtggattgtatcctggctcgt
gtaggagctggagacagtcagctgaaaggtgtgtctactttcatggctgaaatgttggaa
actgcttccatccttaggacagcatctgaaaactctttgataattattgatgagctggga
agaggaacttcgacctacgatggctttggcttggcgtgggctatttcagaatacattgcg
agcaaaatttgtgctttctgtatgtttgctacacactttcatgaactgacagctctcgct
gatcaagttccaacagtaaataacctacatgttactgctctcaccagtgacgacacactg
acgatgctgtatcgtgtcaaggcaggtgtttgtgaccagagttttggaatacatgtagca
gagttggcagctttcccaaaacatgtgatagaaagggcaagagagaaagcactggagctg
gaggagtttcaagacattggcaggcccaatgaatctgaaggagagccagcagccaagaaa
tgctacagagaaagagaggaaggcgaaaagatcattcaggattttctctgtcaagtgaaa
gcattgcccctgacagacatgtcagaagaagacatcaaaaccaagctgaagcagctgaga
gctgatgtgttggcaaagaacaacagtttcgtgaatgaaatcatttccagaacaaaagtt
acaccatga
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