Tympanuchus pallidicinctus (lesser prairie-chicken): 128080823
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Entry
128080823 CDS
T08967
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03250
Viral life cycle - HIV-1
tpai04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128080823 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
128080823 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128080823 (SAMHD1)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
128080823 (SAMHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HD
HD_assoc_2
PDEase_I
Nse5
I-TevI_DNA-bd
Motif
Other DBs
NCBI-GeneID:
128080823
NCBI-ProteinID:
XP_052539487
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All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MGSPAAGWAAAPAKRARRESFAESSGGTAAYGDPRLWDTERLCRHLSRSGVGEPGLLRRF
RESGVTGAMLLDLPACALRITRVCLPDERLKVLACLNQLRQTVDIMKVFNDPVHGHIEIH
PLLVRIIDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLAGCLVRELKERQPEL
GITQRDILCVEIAGLCHDLGHGPFSHMFDGRFIPLARQGLNWKHETASVEMFEHLVTSNK
LEEVMESYGLILEEDMAFIKEQIGGPIDESTCEASWPYRGRPKEKSFLYEIVANKKNGID
VDKWDYFARDCHHLGIQNNFDYRRLIKFTRVCEAGNQKHICARDKEVGNLYDMFHTRNCL
HRRAYQHKIGNIIEIMITEAFQKADSFFQIEGSKGKLYQISTAMEDMEAYTKLTDNIYLE
ILHSSRPELSEAREILRKIERRELYKFLGETQPEKVNEIPKDEYDDLAGDIANSKPEKDP
PNVELTAGDFIVDVVNMDYGMKDQNPIDNVLFYCKADPSKAIKISKEQVSRLLPGTFSEQ
VIRVYCKHQDPVIVSAAKHYFVQWCIKRDFTKPQDGDVVAPHLTPLKQSWNNRSRDEYMT
ASEPSCKQKLSFNK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcccggcggcgggctgggccgcggctcccgccaagcgcgcgcggcgcgagagc
ttcgccgagagctccggcggcaccgcggcctacggcgacccgcggctgtgggacacggag
cggctctgccggcacctctcgcgcagcggcgtgggcgagcccggcctgctgcgccgcttc
cgagagagcggcgtcaccggggccatgctgctcgacctgcccgcctgcgcgctgcgcatc
acccgcgtctgcctcccagatgagagactgaaagtgctcgcctgcctgaaccagctgagg
cagacagtggacatcatgaaggtttttaatgatccagtccatgggcacatcgagatacac
cctcttcttgttcgcatcattgacacgcctcagtttcagcgcctgcgatacattaagcag
ctgggtggcacttactttgtttttcctggagcctcccacaaccgctttgaacactcatta
ggggtgggctaccttgcaggatgtctggttcgtgaactgaaggagcggcagccggagctg
ggtataacccagcgagacatcctctgcgtggaaatcgctgggctttgccatgatttgggt
catgggccattttcacacatgtttgatggaagatttattccacttgctcgtcaaggtttg
aactggaagcatgaaactgcttctgttgaaatgtttgagcacctggtcacatccaacaaa
ctggaggaagtcatggaatcgtatggtctcatcctggaggaagacatggccttcatcaag
gagcagataggagggcctatagatgagtcaacttgtgaggcatcgtggccctaccgagga
cgaccaaaggagaagagtttcctatatgagatagtagcaaacaagaaaaacggcattgat
gtggacaaatgggattattttgcaagggattgccaccacctagggatccagaataatttt
gattataggcgcttaattaaattcactcgagtttgcgaagcgggaaaccagaagcatatc
tgtgcccgtgataaggaagttgggaatttgtacgatatgttccacacccggaattgcctg
caccggcgagcgtaccagcataagattggcaacatcattgaaataatgattacggaagcc
tttcagaaagcagacagtttttttcaaatagaaggctctaaaggaaaattgtaccagatc
tctacagcaatggaggacatggaagcctacacgaagctaactgataacatctacctggaa
attctgcactcaagtcgtccagaactgagtgaggcacgagaaatcctgcgtaagatagaa
cggcgtgagctgtacaagtttttaggagagactcaacccgagaaagtgaacgaaattcca
aaggatgaatatgatgacctggcaggtgacattgctaactccaagccagaaaaggatcct
ccaaacgtggagctgacagctggagacttcatagttgatgttgttaatatggattatgga
atgaaagatcagaaccccattgataatgtcctcttctactgcaaggctgatccttccaag
gccatcaagatcagtaaagaacaggtttcaaggcttttaccagggaccttttcagagcag
gttatccgggtttactgcaagcatcaggatccagttattgtttcagctgcaaagcactat
tttgttcagtggtgtataaagagggatttcaccaaaccacaggatggtgatgtggttgcc
cctcatctaactccactgaaacaaagctggaataacagaagcagggatgaatacatgaca
gcttcagagcccagctgcaagcagaagctttctttcaataagtaa
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