Tympanuchus pallidicinctus (lesser prairie-chicken): 128081222
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Entry
128081222 CDS
T08967
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
CBM_4_9
DUF4998
Motif
Other DBs
NCBI-GeneID:
128081222
NCBI-ProteinID:
XP_052540223
LinkDB
All DBs
Position
Unknown
AA seq
1475 aa
AA seq
DB search
MLIRTCFFFACLPVASHVWGRGGQGSGRLKLTVLSEDRLQMKWKETEGNINGYKVRVKPM
AGDSEQEVMLKTKTPKATVGGLSPTKEYTLQVYVLNGSQEALFAKRKFVIEDLKNASQTR
NNRRNAGAAPGKNLTSAGSSTVEQSLGMETAPPPLSTILTHPAKDRAEKKRHKGTQPKGS
GETTRSQPSVGVTQTPSPTTKSSQRTTANVERESLGKEKPTRDSLRRGYQFQCDTSAMTD
IVLLVDGSWSIGRNNFKLIKDFLSALISPFNIAQDKIRVGLSQYSSDPRTEWDLSAYATR
DQVLEAVRNLRYKGGNTFTGLALTHVLEQNLKPDAGARLEAEKLVILLTDGKSQDDASLA
AQTLKNVGIEIFAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSSLVGRLTRVLCSRI
KERSSKESAGRTVKDVPTNTGPQLSPTDLKISAVTSKSMHLAWSPPLSPPKKYRVVYNPS
KGGTPKEVLLDGAVSSLWLSNLTSHTEYLVSVFPIYDTAVGDGLRGVTSTLPLSAPRSLR
VSELSHNSIRLSWKAAQGATQYLVLCSAAPDGAEDDTTEMKVAEPEVLLDRLSPSTEYSI
AVYALYGEDASDPASIQETTLALSPPRYLSFSELSHSSVRVSWEPATLAVKGHRVTYVSS
RGSNTGEVEVLGTAVSTVLRPLSSLTQYFISVRSVYDEGDSFPITGNVTTLKVPPPRALK
VSELSENSLRLHWEAVAASDVVVYQIKWSTAGGEKPQELSIAGNVATAILPGLQKNTDYK
ISIWAYYKDGARSDTVSIQHRTTSRSPPTNLFIDSESPTSLQIHWKPPEGRIQHYRITYS
PVSDPSTQQTIMASGKSSSVTLQPLLPDRAYKVAVSAVHYTGESESTTATGRTAPVMSKL
PSIRGFVPSKTEACPPISSSAGSVRGFDMMEAFGLVEKEYASIKGVAMEPFVFSGSRTFT
LFRDIQLTLRTSDVHLFAIPPEHTISILLRLLPDTPKEPFAVWQITDEDFQPLLGVNLDP
SKKTLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHLAVSLFKIKLYLDCKKIAERPI
NTIGSISTAGFVMLGKVTRTRGPRSGSVSFQLQSLQVVCNSLGAEEDRCCDLPALRDEES
CPTIAPACSCTSGRPGLPGPPGPPGSPGRRGPQGEQGEPGPKGEPGPPGKVGPAGPSGQQ
GSPGSQGITIQGPVGPPGIKGEKGDTGSPGMQGIPGVQGAPGRDGLQGAKGVRGLEGTAG
PPGPPGPRGFQGVTGFRGSSGEKGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVSQA
CERMIQSHVLKFDSFIHEHARKPVPVWEERLKPGEPGSPGPPGPPGSNGERGENGIPGQT
GKDGYPGERGAPGPKGEKGMAGVNEEGIQGPRGRTASSLGPPGEVVLGKPGPKGYPGNTG
PQGFPGVRGQPGQPGYSGGCDVSGCYGPGRRDFIP
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcgcacctgcttcttttttgcctgcctgcctgtggcaagccacgtctgggga
cgaggggggcaagggtcaggccggctgaaactcacagtcctttcagaagacaggctccag
atgaaatggaaagaaaccgaaggaaacatcaatggctacaaagtgcgggtaaagcctatg
gcaggggactcggagcaagaagtcatgctgaaaacaaagactcccaaagccacggtgggg
gggctgagccctaccaaggaatacacgctgcaggtgtatgtgctcaatggctcccaggaa
gccttattcgccaagaggaaatttgtgatagaggaccttaaaaatgcatcccagactaga
aataaccgaaggaacgcaggagctgcaccaggaaagaatctcacctctgcgggcagctca
acagttgagcagagcctggggatggagacagctccaccacccttgagcaccatcctgaca
catccagcaaaggacagagctgaaaagaaaaggcacaaagggactcagcccaagggctca
ggagaaaccacgaggagccagcccagtgttggtgtgacacaaacaccatcaccaaccaca
aagtcatcccagcgtaccactgcaaacgtggagcgagagtctctaggaaaagaaaaaccc
acaagggattcactgaggagaggttaccagttccaatgtgacacgtctgcaatgaccgat
attgtcctgcttgtggatggatcatggagcattgggcgcaacaatttcaagctcattaaa
gacttcctgagcgctttaatttccccattcaatattgcccaagacaagataagagtaggg
ctgtcccagtacagcagcgatccccgcacagagtgggatctgagtgcttatgcaacgagg
gaccaggtgctggaggcagtgaggaacctgcgctacaagggtggcaacaccttcacaggc
ctggcgctcacccatgtcctggaacaaaatctgaagccagatgctggtgcccgactggaa
gctgagaaattggtaatcctcctgactgatggaaaatcccaggatgacgccagcctggca
gctcagaccttgaaaaacgtgggcatagagatatttgctattggggtgaagaacgcagat
gaggctgagctgaagcaggtggcctcagagccactggagctcacagtgtacaacgtgctg
gacttccccctgctcagctccctggttggcaggctcacccgggtcctctgcagcaggatc
aaagagaggagcagcaaggagagtgcaggtagaactgtgaaagatgtccctacaaataca
ggtccacagctgagcccaacagaccttaaaatatcagctgtgacttctaaaagcatgcac
ttggcctggagtcctcctctgagtccaccaaagaaataccgcgttgtgtacaacccatcg
aagggcggcactcccaaggaggtgcttctggatggagctgtctcctctctgtggctttcc
aacctgacctcgcacacagagtacctggtgtcggtgtttcccatttatgacacagctgtt
ggggatgggctgagaggcgtcacctccacattgcctctgtctgccccccgctccctgcgt
gtctccgagctgagccacaacagcatcaggctgagctggaaggcagcccagggagccacg
cagtacctggtgctctgctctgcagcccccgatggagcagaggatgatacaacagagatg
aaggtggctgagcccgaggtccttctggacaggctgtcacccagcactgagtactccatt
gcagtgtatgcattgtatggggaagatgccagtgatccagccagcatccaggaaaccacc
ttggccttgagccctcccaggtacctgagcttctcagagctcagccactcatccgtgcgg
gtcagctgggagccagcaacactggcagtgaaaggtcatcgtgtcacctacgtgtctagc
agagggagcaacactggggaggttgaagttcttggcactgcagtgtccactgtcctgaga
ccactgtcctccctcacccagtacttcatcagtgtccgatctgtgtatgatgagggtgac
tcctttccaatcactggcaatgtcaccactttgaaggtccccccgccgcgggcgctgaag
gtttctgagctctctgagaacagcctccggctgcactgggaagctgtcgctgcctctgat
gtggttgtctatcagatcaagtggagcacagctggtggagagaagcctcaggagctctcc
atcgctggaaatgtggcaactgctatcctgcctggattgcagaagaacacagactacaaa
atatccatctgggcctactacaaagatggtgctcgaagtgacacggtttccattcagcac
agaaccacttctcggagcccacccaccaacctcttcatagactctgagagccccaccagc
ctccagatccattggaagccccccgagggccgcatacagcactacagaatcacctacagt
cctgtttctgaccccagcacccagcaaacaatcatggcttctgggaaaagcagcagtgtg
accttgcagccgctgctgcccgatcgagcctacaaggtggcagtttctgctgtccactac
acaggagagagcgagagcacaactgcaacgggtcggacggctcctgtgatgtctaaactg
ccttcaatacgaggatttgttccatctaagacagaagcctgtccccccatcagctcttct
gcaggctccgtacgaggattcgatatgatggaagcgtttggcttagtagagaaggaatat
gcctccattaaaggagtggctatggagccattcgtatttagtggctcccgcaccttcacc
ctgttcagagacattcagctcaccctgaggaccagcgatgtccacctctttgccatccca
cccgagcacaccatcagcatcctcctgcgcctccttcctgacacccccaaggagcccttt
gctgtgtggcaaataaccgacgaggacttccagcccctccttggtgttaaccttgacccc
agtaagaaaaccttgacctatttcaatcatgactacaaggctgatttgcaggaagtctcc
tttgaccagcaggaagtgaagaagatattctatgggagttttcataaggtgcaccttgca
gtgagccttttcaagatcaagctctatctggactgtaagaaaatagcagagagacccatc
aacaccattggcagcatctctactgctggcttcgtcatgctgggaaaagtgacacgaacc
agagggcccaggagtggatcagtatcgttccagctgcagtcgttgcaggttgtgtgcaac
agcttaggggcagaggaggacagatgctgtgatcttcctgcattgagggacgaggagagc
tgccccaccatagctcctgcctgctcctgcacatctggccgcccaggcttgccaggtcct
ccaggtccccctggcagccctgggaggagaggaccacaaggtgagcagggggagccaggc
cccaagggtgaaccaggcccacctggaaaagtgggaccagcaggtccaagtggccagcaa
ggctccccaggttcccaaggaatcacaattcagggccctgtggggccaccaggtattaaa
ggagagaaaggagacactggaagtcctggcatgcagggcattcctggtgtgcagggagct
ccaggcagagatggtcttcaaggtgcaaagggggtgaggggattggaaggcacagctggg
cccccaggacctcctggaccaaggggtttccaaggagtgacaggtttccggggcagcagc
ggtgagaagggacctccaggtgatgttgggccaacaggactaccaggtccaaaaggagaa
agaggagaaaaaggggaaccacagtccttggccacaatttaccagctggttagccaggct
tgtgagcggatgatccagagtcacgtgttgaaatttgactcattcattcacgaacatgca
aggaagccggttcctgtttgggaagaaagactgaagccaggagagccgggatcaccaggt
cctccaggtcctcctgggagcaatggagaaagaggagaaaatggcatccctggtcagaca
ggaaaagatgggtatcctggagaaagaggtgccccaggacccaagggagaaaaaggaatg
gctggagtcaatgaggaagggatccaaggacccagaggcagaacagcttcttctttaggc
ccaccaggagaagttgtgttggggaaaccaggcccaaagggctacccagggaacaccggt
cctcaaggttttcctggtgtcagaggacagcctgggcagcctggatactcagggggctgt
gatgtctctggatgttatgggccaggtagaagagatttcatcccctga
DBGET
integrated database retrieval system
