Tympanuchus pallidicinctus (lesser prairie-chicken): 128081711
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Entry
128081711 CDS
T08967
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128081711 (CHD9)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128081711 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Motif
Other DBs
NCBI-GeneID:
128081711
NCBI-ProteinID:
XP_052541169
LinkDB
All DBs
Position
Unknown
AA seq
2892 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAP
NQQKLSDFEQLNQYDSLKLHQVNQTFNSSTDNVLSPHSQFNCSPIHPQNQTNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRSQQ
SRNNTGQDALSQPKDFLEVNVSTSHRVSVNHPPPVSNPSTSQQPLSVQPFSQTANASLHF
CGNQEGTFGGQSPTITPCSVNNGQQFSSPYSYSNNHISPTSLLQSTTALSSSQQTHPISD
FTGSDAFTSQTGTKQDTAEHMLNANTPLNSNSFQMLHSSHPQGNFSSSKLSPVSISFPAS
AGSASQISHFTDPIESNGFTSLDDNLLHQVDAPNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEDHITPHPVTQSSDIVRAQSQTQIHPWHSSVSSQHLQDRSRVTFQGQP
PSSKKTDGSGSHTKSQNTQVRAMSEKKQRKKADSESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKTKEKTKIGKLIITLGK
KQKRKNESSDELSDAKQTPQKSLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAKASAK
IKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRIIKKEVSAGMTVETEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVVYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEHSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LSGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFKETYSPTAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEVESEGEDKPKLRRPCDRSNGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGNEFQKVFDGTDASEIDVWVPEPDHSEVPAEWWDAEADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDYIDGDVEDPEYKPAPAM
FKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQ
IQPAFPVQTSMMQPPYEEVTLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGR
FDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPSIFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTD
YHILRDPELSFMSAQRNYSQNKVALSRTSTPLLHQYQMALSASPLTPQSRLPDAKVNTPE
DMKVKTENLKEDAQSSEEESMSTEETQTVMKSEPLSPKNGAPVQNTEHKPSVKIETDRRM
VAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSG
SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYDEESVA
SLSTTHDETQDSFQMNNGTPNSTYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWP
SARRNYDSNTVASFYTTKLLDSPGAATDYSEPGAPTPPLAAVKEEYDQSPQMSKVKKHVR
EKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLRDLQNASETSLVNFP
KSLPESGASSHLTASANGVIVDSQPVLKKRRGRRKNVEGVDVLFVNRNKQPNHVNPGINS
CQVAAGISPALNYTQSQGMLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVE
DLGACIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLK
DLCRFLKENPEYGVAPEWGEIVKQSGFLPEGMFDRILTGPVVREEVSRRGRRPKSEIAKA
TAAAAAATAASVSVNPLLTNGLLPGVDLSSLQALQQNLQNLQSLQVTAGLMGMPAGLTTG
GEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKSTESISEDKKGSDLKEADIKKERTEDQN
ADTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFD
VQNSESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTS
SSSEDSDSSDED
NT seq
8679 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcgcttgttgatgaattaaat
ttaggtgcagaatttgaacctttgcacatagactcattgaatcatgtgcaggatgctccg
aatcaacaaaagttgagtgactttgaacagctgaatcagtatgattccctgaaacttcac
caagtgaatcagacttttaacagttcaacagacaacgtcttatcaccacactctcagttc
aactgttcaccaattcatccacaaaaccagactaatgggatgtttccagatgtggccgat
ggtagtcccatgtggggtcatcaaactgccacaactgtttcaaatcaaaatgggtccccc
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcgctacgatcgcaacaa
agcaggaacaacacggggcaagatgctctgagtcagccaaaagacttcttggaagttaac
gtatctacttctcacagagtcagtgttaaccacccacctccagtttctaatccttctact
tcacagcagcctctgtctgttcagccgttttctcaaactgcaaatgcttcattacatttt
tgtgggaatcaagaaggaacttttggtggacagtccccaacgattactccatgttctgtc
aataacggccaacaattttcatctccttattcttactctaataaccacatttctcctacc
agccttcttcagtctaccacagctctttctagtagccagcagacacatccaatctctgat
ttcactggaagcgatgcctttacatctcaaacggggaccaagcaagacacagctgagcac
atgttaaatgctaatacacctttgaattcaaatagttttcaaatgttgcattcttcgcat
cctcagggcaactttagtagttcaaagctctctcctgtgagtattagttttccagcttct
gctggttctgcttctcagataagccatttcactgaccctattgagagcaacggttttaca
tctttggatgataacttacttcatcaagttgatgctccaaacgaaccatttacaggactt
gacccagatgacctccttcaggaagatcttctaccacagtttgatgattctgcgtttgtt
caggatagcacaagccatgttttagagcatgacctagaagaccacataaccccacatcca
gtaacacagtcatctgatattgttcgggcacagtctcaaactcagatccatccctggcat
tcttcagtttctagtcagcatctgcaagacagaagtcgtgtaaccttccaaggacagcct
ccttcctccaagaagactgatggttcaggatcacataccaagtcacagaatacccaggtg
agggcaatgtctgaaaagaagcagaggaaaaaagcagactctgaaagtaaacaagagaag
gcaaatcgcataatatctgaagcgattgcaaaagcaaaagagagaggagagagaaacatc
ccacgagtaatgagtccagaaaacttccccagtgtttcagctgaaggaaaagaggaaaag
aaaggtagaaaagttaaatcgaaacccaaggacaaggaaagcaaaaagccaaaaactggt
tcctcatccaaaactaaagagaaaacaaaaattggaaagctaatcatcacgctgggtaag
aaacagaaaagaaaaaatgaatcttcagatgaattgtctgatgctaagcagactccacag
aagtcattgaaagatgaggattcacagaagagaagatcaaatcgtcaagttaaaaggaaa
aagtatgctgaagaaggagaaggaaaacaatcggaagaagaagctaaagcttctgcaaaa
atcaaaaagaattctgctcctttacctgctgagcagcctttacaattatttgtggagaat
ccaagtgaggaagatgcagcaattgtagacaaaatcttatcctctaggataataaagaaa
gaagtatctgctgggatgacagtagaaacagaagagttttttgtaaaatacaagaattac
tcttatctccactgtgagtgggccacagaacagcagcttttaaaggataaaagaatccag
cagaaaataaaacggttcaaactaaggcaagcacaaagagctcacttttttgcagatatg
gaagaagaaccttttaatcctgactatgttgaagtagaccgggtattagaagtctctctt
tgtgaagataaagacactggtgagcctgttgtttactatttagtaaaatggtgttcattg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgactcaaggagattggaccgaccacctccaaac
tcatggaagaagatagaacactcaagggaatataaaaatggcaatcagctcagggaatat
caactggaaggacttaactggcttctattcaactggtacaatagacgaaattgcatttta
gcagatgaaatgggtcttggcaaaaccattcagtcaattacattcctctatgaaatcctc
ctgtctggtataagagggccttttctgatcatagctccgctttccactataacaaattgg
gaaagagaatttcgcacgtggactgaccttaacgttgtagtgtaccatggaagtatgatc
agcaggcagatgattcagcaatatgaaatgtacttcagggactcccagggacgtattgtt
cgaggtacctacagattccaagccattatcacaacgtttgaaatgattcttggtggctgt
ccagagctaaatgcaattgagtggcgatgtgttattattgatgaagcgcacagactgaaa
aacagaaactgcaaactgttagaaggactaaaattaatgaaccttgaacataaagtgctg
ttaactggtacaccactgcagaacacagtagaagagttatttagtcttcttcattttctt
gaaccattgcgttttcctgctgaatcaacattcatgcaagaatttggagaccttaaaaca
gaggagcaggttcagaaattacaagctatcctgaaacccatgatgctcaggcgattaaaa
gaagatgtagaaaaaaagctggctcctaaggaagagactataattgaagtagaactaaca
aatattcagaagaaatactatcgagcaatcttggagaaaaattttgctttcttatctaaa
ggagctgggcaagcaaacgtaccaaatttggttaacactatgatggaactcagaaaatgt
tgtaatcatccttatctcatcaaaggtgctgaagagaaaatccttggagaatttaaagaa
acttatagcccaactgctccagacttccatctacaagcaatgatccagtctgctggtaaa
ttggttcttattgataaacttcttccaaaaatgaaagcaggaggccacaaagtccttatc
ttctctcaaatggtgcgctgccttgatattttggaggattacctcatacataaaagatac
ttgtatgaacgaattgatggacgagtacgaggcaacctcaggcaagctgcaattgaccgg
ttcagcaaaccagattccgatcgctttgtgttccttctgtgcaccagagctggtggtttg
gggattaatttgactgcagcagatacatgcataatttttgattcagactggaatcctcaa
aatgatctgcaggctcaagcccgttgtcacaggattggtcagaacaaagcagtgaaggtc
tacagactgataactcgtaactcgtatgaaagagagatgtttgacagagcaagtctgaaa
ttgggactggataaggctgtcttacagagtatgagtggaagagaaaacagtgttggtggt
atccaacaactctctaaaaaagaaatagaagacttgcttcgaagaggtgcgtatggtgcc
attatggatgaagaagatgagggctccaaattctgtgaggaagacatcgaccaaattttg
cagcggcgtaccaaaactatcacaattgaatcagaaggaaggggctccacatttgccaag
gctagctttgttgcatctggaaacaggactgatatttctctagatgatcccaacttctgg
cagaaatgggccaaaaaagcagaaatagatatagatgctatcagtggccgaaacagcctg
gttattgataccccacgaattagaaaacaaacaaggcccttcagtgctacgaaagacgaa
ctggctgaattgtctgaagtggagagcgagggggaggataagcccaaactccgcaggcct
tgtgaccgttccaacggatatggaagaacggagtgctttcgtgtggagaaaaacctactg
gtctatgggtggggtcgatggagagagattttatcacatggtcgcttcaagagacagcta
aatgaacaggatgtggagataatttgccgagctctcttagcctattgtcttgttcactac
agaggggatgagaaaataaaaagttttatatgggatctgattactccaacagaagatggg
caaacacgagagttgcagaatcatcttggcctgtcagcacctgtgcctagaggaagaaaa
ggaaaaaaagtgaagacccaggctagcacttttgatatacacaaagcagaatggcttcga
aagtacaatccagaacatctgttgcaagatgaaggatacaaaaagcacataaaacaccac
tgtaacaaggtcttgcttcgagtaagaatgctgtattacttaaaacaagaagtgattggt
aatgaatttcaaaaagtgtttgatggaactgatgccagtgaaattgatgtttgggtccct
gagccagatcactctgaagttcctgctgagtggtgggatgcagaggcagacaaatccctt
ctaattggagtttttaaacatggttatgaaaaatacaacacgatcagagcagacccggca
ctgtgcttcttggaaagggttggcaagccagatgataaagcagttgctgctgagcagaga
gcaaatgattatattgatggagacgtcgaagatccagagtataaaccagcaccagcaatg
tttaaagatgacatagaggatgacgtttcatccccaggtgatttagtaatagcagatgga
gatgggcaaatgatggaaggtgacaaaatctattggccaactcagtctgctttaacaacg
cgtcttcgccgcttgataacagcttatcaaagaacaagcaaaaataggcaggcccagcag
atccagccagcattcccagtacaaactagtatgatgcagcctccatatgaagaagttact
ctaaatccaaagatggctgccaaaatagaaaggcagcaaaggtggacaagaagggaagaa
gctgacttctacagagttgtgtccacatttggagtggtatttgatcctgaacggggacgg
tttgattggaccaaattcagagctatggctaggctgcataagaaaactgatgagagctta
gagaaatacctgtatgcatttatgtcaatgtgcaggagagtctgtcgtctcccctcaaaa
gaagaactggtagacccaagcatttttatccagccaattacagaggagcgtgcctctcgg
actttgtatcgcattgagcttttaaggaaggtgcgagaacaggctcttagacatccacag
ttatttgaacgactaaagctatgtcagccaaacccagacttacctgtctggtgggaatgt
gggactcatgacagggatttacttattggagctgctaaacatggggttagcaggacagat
tatcatattcttcgtgatcctgagctctcatttatgtctgcgcagaggaactatagtcag
aacaaagtggcactgtcaaggacttctactccactcttacatcagtatcagatggcatta
tctgcttctcctcttacacctcagtcaagattgccagatgctaaagtgaatactcctgag
gacatgaaagttaaaactgaaaatctgaaagaggatgctcagtcatctgaagaggaatct
atgtctacagaggagacgcagacagtaatgaaatctgagcctctgagtccaaaaaatggc
gcaccagtacaaaatacagaacacaaacctagcgtgaagattgaaacagacaggcgcatg
gttgcagcaaggacagagcctctaactccaaacccagcttccaaaaaacagagagtcagc
aaaagaggatcagactctagctctgactcagactctgactcagatagatcatcctgttct
tccaggtcatcttcttcatcctcttcatcttcctcatcttgttcacactctcgatcaggc
tctagttcttcatcatcttcatcttgttcttcagcatcttcatcttcatcatcttcatcc
tcatcatcgtcgtcgtcatcatcgtcatcgtctgaagagagtgatagtgatgaagaggag
gcacaaaaacgtgcagaaggaacccctcatataaaagcatatgatgaagagagtgtagct
tctctgagtacaacacacgatgagacgcaagacagtttccagatgaataacgggacacca
aattccacttacctcctacaaggtggatacatgttggctgcatcttactggccaaaggat
cgagttatgattaaccggcttgatagtatttgtcaaacagtgttgaagggtaaatggcct
tcagcaagaaggaactatgacagcaatacagtggcatctttctacacaaccaaacttctg
gatagtccaggtgcagctacagattacagtgagcccggtgcaccaacaccccctcttgca
gctgttaaagaagaatatgatcagtcaccacagatgtcaaaggtgaagaagcatgtacga
gaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaag
cagggactgtctcagaaaaggccatttgaaagcgaggagggtgcactgggacagcagcaa
tacctggcgcggctacgtgatctccagaatgcttcagaaaccagccttgtcaacttccca
aaatcacttcctgaatcaggtgcttccagtcacttaacagccagcgccaatggagtgata
gtcgatagtcaacctgtactcaaaaagagaagagggagaaggaagaacgtagaaggagtt
gatgttctctttgtaaacagaaataagcagcccaatcatgtaaatccaggtattaactcg
tgtcaggttgctgctggaataagcccagcactcaattacacgcagtctcaaggcatgctt
gatgcagagagtccagttcctgttattaacctaaaagatggaacgaggctggcaggtgat
gatgctcccaaaaggaaggatttagaaaggtggctgaaggaacatcctggctatgttgaa
gatttaggagcttgtattcctaggatgcaactgcatgaagggaggcccaaacaaaaacga
caccgttgtcgaaaccctaataaactagatgttaatagtttgactggtgaagaacgtgtc
cagctcataaatagaagaaatgcaagaaaggtggggggtgcatttgctccccctctgaag
gatttgtgcaggttcttgaaagaaaatccagagtatggagtggctcctgaatggggagaa
attgtaaaacagtctggatttcttccagaaggtatgtttgaccgtattctcaccgggcct
gttgtgcgggaagaagtaagccggaggggaaggcgccccaaaagtgagattgctaaggca
acagcagctgcagctgctgccactgctgcaagtgtatcagttaaccctctgctcaccaac
ggattgcttccaggagtggatctgtctagtcttcaggccttacaacaaaacctgcaaaac
ctgcagtcactgcaagtaacggcaggattgatgggaatgccagctggcttaactactgga
ggagaagctaagaacatggctgccatgttccccatgctgctgtcagggatggctggatta
ccaaacttgctgggcatgggaggacttctgacaaagtctacagaatctatttcagaggat
aaaaagggaagtgatttgaaagaggcggatataaagaaagaaaggacagaagaccaaaat
gcagatactggtggtgaaaactctgtttcaagctctccttcaacatcctctgctgctgca
gctgccaatcctctctctcttaacccattacttttgtccaacatactttatccagggatg
cttctcactccaggccttaatcttcatatcccagctttgtctcagtctaatatttttgat
gtacagaacagtgaaagtaatgacacgggctcagccaagcctacggaagaaaaggaggaa
aattctcgggttagagatcaggaagacaaagggggaacagagccaagctctcacaatgaa
aacagcacagatgaaggttcagagaaagcagatgcttcatctggatctgatagtacatcg
tcttcatctgaagattcagattctagtgatgaagactga
DBGET
integrated database retrieval system
