Tympanuchus pallidicinctus (lesser prairie-chicken): 128081717
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Entry
128081717 CDS
T08967
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128081717 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpai03021
]
128081717 (SF3B3)
03041 Spliceosome [BR:
tpai03041
]
128081717 (SF3B3)
03036 Chromosome and associated proteins [BR:
tpai03036
]
128081717 (SF3B3)
Transcription machinery [BR:
tpai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128081717 (SF3B3)
Spliceosome [BR:
tpai03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128081717 (SF3B3)
Complex B
128081717 (SF3B3)
Complex C
U2 SnRNP specific factors
128081717 (SF3B3)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
128081717 (SF3B3)
TFTC complex
128081717 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
128081717
NCBI-ProteinID:
XP_052541196
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EEWYVLVGVAKDLILNPRSVAGGFVYTYKLVNGGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacctcacattacagcgtgccacgggcatcagctatgccatccatggc
aacttctcaggaaccaagcaacaagaaattgttgtttcccggggcaagatcttggagttg
ctccgcccagaccccaacacagggaaggttcacaccttgctgacggtggaagtgtttggg
gtcatccgctccctcatggccttccggctgacaggaggaaccaaagactacattgttgtg
ggcagcgactcagggcgcattgttatcctggagtaccagccttccaaaaacgtgtttgag
aagattcatcaggaaacctttggcaagagcggatgtcgcaggattgttccaggccagtac
ttggccgtagacccgaagggccgtgctgtcatgatcagtgctattgaaaagcagaagctg
gtgtatatcttaaacagagatgctgcagctcggctcaccatttcctccccactggaagcc
cacaaggccaataccttggtgtaccacgtggtgggagtcgatgtggggtttgaaaaccca
atgtttgcttgtctggaaatggattacgaggaagcagacaacgatccaacaggagaagca
gcagccaacacacaacagaccttgacattttatgagctggacttgggtttgaatcacgta
gttaggaaatacagcgagcctctggaagagcatggcaacttccttataacagtccctggt
ggttctgatggacccagtggggtgctgatctgctcagaaaactacatcacttacaaaaac
tttggtgaccagccggatatcagatgcccaattcccaggaggcggaatgacttggatgac
ccagagagaggtatgatttttgtctgctctgctacacacaagaccaaatccatgttcttc
ttcctggcccaaacagagcagggagacatcttcaaaatcaccctggagactgatgaggac
atggtcactgagattcgactgaagtactttgacaccgtgcccgtagctgctgccatgtgt
gtgctgaagacaggatttctctttgtggcatctgagtttggaaaccattatctgtaccag
atagcccacctgggtgatgatgatgaggaaccagagttctcttctgccatgcctctggag
gaaggagatacattcttttttcagccacgacctctcaaaaacctggtgctggtggatgaa
ttggacagtttgtctcctattctgtgttgtcagatagcagatcttgccaatgaggacaca
ccccagctgtatgtggcctgcggtcgggggccacggtcatctctgagggttctaagacat
ggacttgaggtatctgaaatggccgtctcagagctgcccggtaaccccaatgctgtatgg
actgtgaggagacacgttgaagatgagtttgatgcctatatcattgtgtccttcgtcaac
gccaccctggtgctgtctatcggagagactgtagaagaagtgactgactctggattcctg
ggtactacacccaccttgtcctgctctcttctgggggatgatgccttagtacaggtgtac
ccagatggcatccggcacatccgagcagataagagggtgaacgaatggaagacaccaggg
aagaaaacaattgtgaaatgtgctgtgaaccagagacaagtagtgatagcactgactgga
ggagagctggtttattttgagatggacccgtcaggacagctgaatgagtacactgaaaga
aaggagatgtcggctgatgtcgtttgcatgagtttggccaacgttccacctggggagcag
cgttcccggttccttgctgttgggctggtggacaacactgtcaggattatttccctcgac
ccttcggactgcttgcagccactgagtatgcaggcccttcctgcacagcccgagtcgctg
tgtatcgtggagatgggtggcaccgagaagcaggacgagctgggggagaggggctccatt
ggctttctctacctgaacattggactgcagaacggtgtgctgctgcgaactgtcctggat
ccggttacgggtgatctttccgataccaggaccaggtacctgggctcacggcctgtgaag
ctcttccgagtccgaatgcaaggccaagaagcggtgctggccatgtcaagccgttcctgg
ctcagttactcctatcagtcccgtttccacctgactcccctgtcttatgagactctggag
tttgcgtctggtttcgcatctgagcagtgcccagagggtatcgtggccatctccacaaac
acgctgaggattttggcactggagaaattgggggcagtcttcaaccaggttgccttccca
ttgcagtacacacctcgaaaatttgtcattcaccctgagagcaacaacctgattatcatt
gagacggaccacaacgcttacactgaggccaccaaggcacagagaaagcaacagatggct
gaggaaatggtggaggctgcaggtgaagatgagagggagctggctgcggagatggctgca
gccttcctcaacgagaatctccctgaatccatctttggtgccccaaaggcagggaacggg
cagtgggcctctgtcatcagggtgatgaaccccatccagggaaatactttagatctggtc
cagctagagcagaacgaagcagccttcagcgtggctgtgtgccgcttctccaacacgggt
gaggagtggtacgtgctggtgggagttgccaaagacctgattctgaacccgcgctccgtc
gccgggggctttgtctacacctacaagctggtgaatggcggtgagaagctggagtttctg
cacaagacccctgtggaggaggttcctgcagccatcgcccctttccaaggtcgagtcctg
attggagtgggaaagctcctgcgtgtgtacgacctgggcaagaagaagctgcttcggaag
tgtgagaacaagcacattgccaactacatctgtgggattcaaaccatcgggcacagagtg
atcgtttcagatgttcaggagagcttcatctgggtgcgctacaaaaggaatgagaaccag
ctcatcatctttgctgatgacacttatccccgctgggtcaccacagcaactctcctggat
tatgacaccgtggccggagcagacaagtttggcaacatctgcgtggtgaggttgcctccc
aacaccaatgatgaggtagatgaggatcccaccggcaacaaagctctctgggacagaggg
cttcttaatggagcatcacagaaggctgaagtgattatgaattaccacgtgggagagaca
gtgctttcattgcagaagaccacgctgatcccgggaggctctgaatctcttgtttatacc
accttatcagggggaataggaatcttagttccttttacttcccatgaggatcacgacttc
ttccagcacgtggaaatgcacttgagatctgagcatcctcctctctgtgggcgagaccat
ctcagcttccgctcctactacttcccagtgaagaatgtgatcgatggggacctgtgtgag
cagttcaactccatggagcccaacaagcagaagaatgtggccgaagagctggaccggacc
ccacccgaggtgtccaagaagctggaagacatccgcacacgctatgctttctga
DBGET
integrated database retrieval system
