KEGG   Tympanuchus pallidicinctus (lesser prairie-chicken): 128081850
Entry
128081850         CDS       T08967                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4 isoform X1
  KO
K10755  replication factor C subunit 2/4
Organism
tpai  Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03030  DNA replication
tpai03410  Base excision repair
tpai03420  Nucleotide excision repair
tpai03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tpai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    128081850 (RFC4)
   03410 Base excision repair
    128081850 (RFC4)
   03420 Nucleotide excision repair
    128081850 (RFC4)
   03430 Mismatch repair
    128081850 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tpai03032]
    128081850 (RFC4)
   03036 Chromosome and associated proteins [BR:tpai03036]
    128081850 (RFC4)
   03400 DNA repair and recombination proteins [BR:tpai03400]
    128081850 (RFC4)
DNA replication proteins [BR:tpai03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    128081850 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    128081850 (RFC4)
Chromosome and associated proteins [BR:tpai03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    128081850 (RFC4)
DNA repair and recombination proteins [BR:tpai03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     128081850 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    128081850 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_16 AAA_30 AAA_22 AAA_11 DUF815 Mg_chelatase AAA_24 AAA_14 SLFN-g3_helicase AAA_28 DNA_pol3_gamma3 RuvB_N AAA_19 AAA_5 TIP49_C ResIII AAA_7
Other DBs
NCBI-GeneID: 128081850
NCBI-ProteinID: XP_052541513
LinkDB
Position
Unknown
AA seq 362 aa
MQAFLKGPSSISTKPPAAKERSAAGSSGEGKRLKPVPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRADGEVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDEIQQQRLLGVSEKENVKITSEAISYLVKVSDGDLRKAI
TYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACWSGSFEKLEAAAKNLINEGYA
VAQLISQLHDLVVESEDFSDKQKSIIVEKLAEVDKCLADGADEYLQLISLCALVMQQLTR
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaaaggcccatcctccatcagcaccaagcctccagccgccaaggag
aggagcgcggcggggagcagcggggaaggcaagaggctcaaacccgtcccctgggtggag
aaatatcgccccaaaaacgtggatgaggtcgctttccaggatgaagttgttgctgtgctg
aaaaagtccttggaaggcgctgatcttcccaatctgctgttctatggcccgcctggaact
ggaaagacctccactattttagcagctgcccgagaactctttgggcctgaactattccga
caaagagtcctggagttgaatgcctctgatgagcgtgggatacaggtgatccgcgagaaa
gtgaaggcttttgctcagctcacggcgtctggaagcagagcagatggtgaagtttgtcct
ccttttaagattgtgatcctggatgaagcagactctatgacctcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttttgccttatttgtaactac
atcagcagaataatcgaacctttaacatctcgatgctccaaattccgtttcaaacctttg
tcagacgaaatccagcaacagaggctattgggtgtttctgagaaggaaaatgtgaaaatc
actagtgaggcaatatcttaccttgttaaagtgtcagatggggacttaagaaaagcaatc
acttaccttcaaagtgccactcgcttgatgggtgggaaggagatcacagagaagactgtt
actgaaattgctggggtcatcccaagagaaacaatagatggactgctgtctgcctgttgg
agtggctcgtttgagaaactggaagcagcagcaaagaatcttataaatgagggctatgct
gttgctcagctcataagccagcttcatgatcttgttgttgagagcgaagacttcagtgac
aagcagaaatcaatcattgttgagaagcttgcagaagtggacaaatgcttggcagatggt
gctgatgaatacttgcagttgataagtctgtgtgcccttgtgatgcagcagctaacacga
aacacctag

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