Tympanuchus pallidicinctus (lesser prairie-chicken): 128082028
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Entry
128082028 CDS
T08967
Symbol
UTP4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128082028 (UTP4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tpai03009
]
128082028 (UTP4)
Ribosome biogenesis [BR:
tpai03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
128082028 (UTP4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR5
WD40
WD40_Prp19
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_Aladin
Beta-prop_VPS8
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_HPS5
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_Vps41
Beta-prop_IFT140_1st
Ge1_WD40
DUF5581_N
Beta-prop_SPT8
DUF7165
Motif
Other DBs
NCBI-GeneID:
128082028
NCBI-ProteinID:
XP_052541814
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MGEFEVHRVRFFDLVPAGVRCMAYRHRGCRLALARTDGAVEVYNFAANYYMEKAIPGHQA
RSVEALCWAAGERLFGAGLSGDITEYDLERLHPARAVDGFGGPIWSMAANNDGTRLAIGC
EDGSVKLFQVVPGGVQFEKNLDRQKGRVLCLSWHPSGTHLAAGSINFIRVLDVRSGRTAQ
RIMVNYHVPKSKKRECVVWSIAFLSSGTVVSSDSFGRVQFWDWERGTLQDSHTVSTSAAL
SLAVSEEEDSIVVGTSAGATYQFQLLPVKAGGQEKRWVKTKPFQHHTHDVRAVVHTPTAL
ISGGLDAQLVIRPLMEKVQKKGYDTALRKFTLPHRRLVSCARKARLLLFQFSQHLELWRL
GSTNKTGKDGEVLPVSRMPEHLLQLKSKGPEHIYCSCVSPCGSWIAYSTASRFHLYRVQH
EGDSISVKKVPGVPKLLLPAYQLQCASDSGRLFIASDRGSVHVVQLLELGGCKHLHTLRP
PAGSREAVYLLASSADGNWLAAVSGDWEVHVYSLKHFKHHCTVPTYSCAVTALAIHPATN
NLFISYSDQQLFEFSIPEKQYTAWSRAVQNSGLHRLWLERDSPITHITFNPKNTSQVLLH
DVYMLCVLDKSLPLPDNNALLMNQSTLKQLSEPARRRHLHAFKICKKFQPLLFADLLDER
CLVTVERPAVDINAELPPPVQQQKFGT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgggggagtttgaggtgcaccgcgtccggttcttcgacctggtgcccgccggcgtgcgc
tgcatggcctaccggcaccgcggctgccgcctggcgctcgcccgcaccgacggcgccgtc
gaggtgtacaacttcgccgctaattactacatggagaaggccatccccgggcaccaggca
cgctcagtggaagcgctgtgctgggcagcaggggagcggctctttggggccggcctgagt
ggggacatcactgagtatgacctggagcggctgcacccggcccgcgctgtcgatggcttc
gggggacccatctggagcatggctgccaacaacgatggcacacggctggcgattggctgt
gaggacggctcggtgaagctcttccaggtggtgcctgggggtgttcagtttgagaagaac
ctggaccggcagaaaggacgtgtgctgtgcctctcctggcatccctcggggacccacctg
gcagctggctccatcaacttcatccgtgtgcttgatgtccgctcaggccgaacagcccag
aggatcatggtgaactatcatgtgccaaagtccaagaagcgcgagtgcgtcgtgtggagc
atcgccttcctgtcgagtggcaccgtcgtcagctcagattcatttgggagagtgcagttt
tgggactgggagcgagggactctgcaggactcccacactgtcagcacctcagctgcactc
tcgctggctgtgtcagaggaagaggacagcattgtggtgggcacctcggcgggggccact
taccagttccagctgctgccagtgaaggcaggcggccaggagaagcgctgggtgaagacg
aagccattccaacatcacacccacgacgtgcgagctgtggtgcacaccccgacagctctc
atctctggaggcctggatgcccagctggtgatccgcccgctcatggagaaggtacagaag
aagggctacgacacagcgctaaggaaattcacccttccccaccgacgccttgtctcctgt
gccaggaaagcccggctcctcctcttccagttctcccagcacctggagctctggagactt
ggctctactaataaaactggaaaggatggagaggtccttcccgtgagccgcatgccggag
cacctcctgcagctcaagagcaagggtcctgagcacatctactgcagctgcgtctcaccc
tgtggcagctggattgcctacagcactgcgtctcgcttccacctctaccgtgtgcagcat
gagggcgacagcatcagtgtcaagaaggtccccggcgtgcccaagctgctgctcccagcc
taccagctgcagtgtgcttccgactcaggcagactcttcatcgcctctgacagaggctct
gtccatgtggtgcagctgttggaactgggaggctgcaaacacctgcacacgctgcgccca
cccgcagggagccgggaagctgtctacctgctggcatcgagtgctgatgggaactggctg
gctgcggtcagcggggactgggaggtgcatgtctacagcctgaaacacttcaagcaccac
tgcacggtgcccacctacagctgtgcggtgacagccctcgccatccacccagcaaccaac
aacctttttatctcctactcggaccagcagctctttgagttcagcatccctgagaagcag
tacacggcctggagccgtgctgtgcagaacagcgggctgcacaggctctggctggagagg
gactcacccatcacccacatcaccttcaacccgaagaacacctcgcaggtcctgctgcac
gatgtctacatgctgtgtgtccttgacaagtccctgcccctgcccgacaacaacgccctg
ctgatgaaccagagcaccctgaagcagctctcagagcccgcccggcgccggcaccttcac
gccttcaagatctgcaagaagttccagccgctgctgttcgcggaccttctggacgagcgc
tgcctggtgacggtggagcggcctgccgtggacatcaacgcagagcttccgccgcccgtg
cagcagcagaagttcggcacttag
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