Tympanuchus pallidicinctus (lesser prairie-chicken): 128082039
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Entry
128082039 CDS
T08967
Symbol
KATNB1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tpai04812
]
128082039 (KATNB1)
Cytoskeleton proteins [BR:
tpai04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
128082039 (KATNB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
eIF2A
RMC1_N
Beta-prop_IP5PC_F
PROPPIN
Beta-prop_LRRK2
VPS8_N
Beta-prop_WDR11_1st
WD_LRWD1
Beta-prop_VPS8
Ge1_WD40
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
128082039
NCBI-ProteinID:
XP_052541823
LinkDB
All DBs
Position
Unknown
AA seq
658 aa
AA seq
DB search
MAAAVVTKTAWKLQEIVAHSSNVSSLVLGKKSGRLLATGGDDCRVNVWSVNKSNCVMSLS
GHTTPIESLQISAKEELLVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFV
ASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK
VMFEFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCVLFN
PDGCCLYGGYQDSLRVYGWEPERCFDVVLVNWGKVADLAICNNQLIGVSCAQSTVSSFVV
DLSRVTKSGSVPHGLLRNDEPLAQPTPTGSSLRRSYDRPSTSCSKPQSRVKHSSESERRS
PSSEEERDEKESKAEIQNPEDYKEIFQPKNAISRTPPRMNEPFPAPPEDEPVTAKEAAKP
DQPVEVQTPLPKQELPEPIQRPPIASSTPLPRAEPSVIPAARNEPIGLKASDFLPALKNQ
SQTELVDEEIMSQIRKGHKTVCMVLTSRHKNLDTVRAVWSTSDFKSSVDSAVATNDLSVV
VDLLNIVNQTASLWKLDLCTVVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDIL
AAPPSVGVDITREERLHKCRLCYKQLKNISNIVKNKSGLSGRHGSAFRELHLLMAALE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggccgtcgtcaccaagacggcctggaagctgcaagagatcgtggctcacagc
agcaacgtgtcctcattagtcctggggaagaaatcgggccggctgctggcgaccggagga
gatgactgtcgggtcaacgtgtggtcagttaacaagtccaactgtgtcatgagcttgtca
ggccacacaacacccattgagagcctacagatcagtgccaaggaggaacttcttgttgca
gggtcccagtcagggtccattcgagtctgggacctggaagctgccaaaattcttcgtaca
ctacttggtcataaagcaaacatctgcagccttgacttccatccttatggcagtttcgtg
gcatctggctctctggatacagacattaagctgtgggacgtacgaagaaaaggctgcatc
ttcaagtataagagtcacacacaagcagtgagatgcctccgatttagtcctgatggcaag
tggttagcctctgctgctgatgatcacactgtcaagctgtgggatctgactgctggaaag
gtaatgttcgagttcacaggacattctggcccagtcaatgttgttgaattccatcccagt
gaataccttttggcttctggcagctctgacaggaccattcgtttctgggacttggagaag
tttcatgttgtgagctgtattgaagaggaggctactcctgtcaggtgtgttcttttcaac
ccagatggctgctgtttgtatggtggctaccaggattctctgcgtgtatacggctgggag
ccagagcgctgctttgatgtggtcttagtgaactggggaaaagtggctgacctagctatc
tgcaacaaccagctgataggagtttcctgtgcacagagcacagtctcttcctttgttgtg
gatctcagcagagtcacaaaatcaggttcggttcctcatgggctgctcaggaacgacgag
cctctggctcagcccacccccacagggtcctcccttcgtcgcagctatgacagaccctca
actagctgcagcaagcctcagagcagagtgaagcacagttcagagagcgagagacgcagt
cccagcagtgaagaggagcgggatgagaaggaatccaaggctgagatccagaacccagag
gattacaaagagatcttccagcccaagaatgccatctctcgaactcctcctcgaatgaac
gagccctttccagcccccccagaggatgagcctgttactgcaaaggaagcagcaaagcct
gaccaacctgtggaagtccagaccccgttgccaaagcaagagcttcctgagccaattcag
aggccaccaattgcttcatcaactcctctgcccagggcagagccatcagttattcctgca
gccaggaacgagcccattggcctgaaagcctctgacttcctaccagctctgaaaaaccaa
agccagactgagctcgtggatgaagaaatcatgtcccagatcaggaaaggccacaagact
gtgtgcatggtgctcaccagccgtcacaagaatctggacactgtgcgggctgtatggagc
accagtgacttcaagagctctgtggactctgctgtagcaaccaacgacctgtctgttgtt
gtggacctcttgaacattgtcaaccagacagcgtctctctggaagttggatttatgcact
gtcgttctgcctcagatagaaaaacttctccaaagtaaatacgaaagttatgtgcaaacg
ggctgcacctccttgaaactcattctgcagagattcctgccgctgatcaccgacatactt
gctgcaccaccttctgtaggagtggacatcaccagagaggagaggctccataaatgcagg
ctgtgctataagcagctgaagaacatcagcaacattgtaaagaacaagtccgggctcagc
ggccgccatggcagcgccttcagagaactgcatctcctcatggctgcgctggagtga
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