Tympanuchus pallidicinctus (lesser prairie-chicken): 128082202
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Entry
128082202 CDS
T08967
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04510
Focal adhesion
tpai04512
ECM-receptor interaction
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128082202 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128082202 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128082202 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpai04147
]
128082202 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
tpai00536
]
128082202 (COL4A3)
Exosome [BR:
tpai04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128082202 (COL4A3)
Glycosaminoglycan binding proteins [BR:
tpai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128082202 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128082202
NCBI-ProteinID:
XP_052542105
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MAGGGCPQRLALLLLLALPWPGRAAAENCVCKGKSPCFCDSVKGNKGEKGFPGVPGPPGH
RGFPGPEGPPGPQGPKGSPGPVGLAGPKGIRGVPGIPGFSGPPGLPGEPGIAGHPGRSGV
PGCNGTKGDRGFPGPPGRRGAPGIPGIAGIKGDKGCPADGYDQGYGAKGDPGLPGMPGHQ
GAQGVQGYPGETGPRGLPGTSGIPGRPGPPGPKGLMGMKVIGTKGRKGDTGLTGPPGPPG
TVIVTLSGPDNMTDLKGEKGEKGSRGLPGPMGFTGPTGDSQSEKGDQGEPGAQGKPGKEG
APGLPGLPGQNGEQGKPGLAGRQGAKGVKGNTGPPGACGQTEYYDVVGEKGDAGPPGPPG
PKGQRGMPGPQGPPGDAGRPGVSRPGLRGPPGFPGPKGTKGEKGQVGSCIIGPPGLPGIT
GRIGSVGLPGPPGEPGRVTFRTGLPGLPGQPGCAGPPGPPGDMGMKGDEACMCTDCSYIP
GTPGLPGSPGPRGQDGIPGREGAPGPKGAPGSPGAPGFPGAQGPPGFKGDQGRKGSKGEP
GYVYPEGPKGEQGDPGPRGDKGRKGSSGFLGRPGSKGYKGSKGEEGLAGSKGDRGQPGLP
GNPGFPGEMGLPGLPGYGPQGVRGVKGSKGLPGPQGLPGEAGLKGETRRIAPLPALPGPQ
GPDGLPGPPGVPGRIGTSGQPGDVGHPGPTGDTGFPGLGFPGNPGPKGDKGLPGSRGAPG
CEGKIGEPGRAGNLGQPGEKGDPGIIIPGEPGKLGSPGGRGIPGPKGDTGFPGLPGLPGQ
AGRDGNSGLRGDPGSSGVPGDPGFPGKPAECLTGLPGLPGAQGATGSPGRRGSLGSKGKL
GPPGLGIPGIDGKPGEPGLIGLLGNTGLPGLKGQSGRPGVFGVPGPRGEPGIMGPLGIPG
PPGRIGSPGNPGIRGSFGSPGLKGRKGFLGAQGEPGDKGFPGPSETLVVIGNKGEQGSKG
VQGRMGLKGEKGDAGVQGSPGLIGSEGVPGVPGVKGFMGLPGIPGGQGFPGAPGNKGNMG
IPGQKGQKGSPGFPGTSGDPGPTGYGGFPGEKGDPGHPSPGLPGEPGPKGDPGAPGALGR
KGEKGSQGQPGHKGAPGLPGFRGETGVAGNPGRLGLPGDVGVKGQQGHPGQQGVTGPPGA
AGYPGENGLAGERGNQGQDGMPGAPGLKGEPGAPGRGIPGLQGVPGRRGVKGDMGLPGFP
GPPGMKGHQGDQGPIGPPGLMGLPGFQGATGMAITGPKGNRGIPGADGRPGIPGFQGLPG
LPTMSIKGSKGVRGADGIQGPMGPAGDSGPPGPKGVEGRPGYPGARGDPGFLGFPGVKGE
KGNQGPPGPRGAEGPMGPKGQPGPPGVSGRIFSVPGSKGPPGLPGIPGTPGDQGIQGIPG
LQGPKGVKGLPGSFGRPGQPGQPGPKGDRGFPGQRGQPGLIGFPGLQGLPGSPGTTTTGP
TRRGFIFTRHSQSTKIPSCPPGTSQIYIGYSLLFVQGNERAHGQDLGTAGSCLQRFTTMP
FLFCNTNDVCSFASRNDYSYWLSTATAMPVDMAPISGKALEPHISRCIVCEGPAMVIAVH
SQTTAVPACPGGWISLWKGFSFVMYTSAGSEASGQALASPGSCLEEFRAIPFIECHGRGT
CNYYTNSYSFWLASLNPRRMFRKPMPQTLKAGELENVISRCQVCMKRPV
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcggaggctgcccacagcgcctggcgctgctgctgctgctcgccctgccgtgg
ccgggccgcgccgcggctgagaactgtgtatgcaaaggaaaaagcccctgcttttgtgat
agcgtgaaaggcaataagggtgaaaaaggcttccctggtgttccagggccacctggtcat
agaggctttccaggtccagaagggcctccaggaccacagggaccaaagggttcaccagga
cctgtgggcttggctggacccaaaggtatacgaggagtcccaggaatccctggattttca
ggtccgccaggccttccaggtgaaccaggaattgctggccaccctgggcgctcaggtgtt
ccaggttgcaatggcacaaagggtgatcggggtttcccaggtcctccaggtagaagaggt
gctccaggcattccaggtattgctggcatcaaaggagataaggggtgccctgcagatgga
tatgaccaaggatatggtgcaaaaggtgatcctggattgccaggaatgcctgggcatcag
ggtgctcagggtgttcaaggatatcctggggaaactggaccacggggccttccaggaact
tctggaataccagggagaccaggacctcctggacctaagggtcttatgggaatgaaagta
ataggaaccaaaggaagaaagggagacactggattaactggacctcctggaccaccagga
actgttattgttacattaagtggaccagacaacatgacggacttgaaaggagagaaagga
gaaaaaggatcaagaggacttccagggccaatgggatttacagggccaactggtgattct
cagagtgaaaagggtgaccaaggagaacctggagcacagggtaaacctggtaaagaaggt
gctccgggtctacctggattaccgggacaaaatggtgaacagggcaaaccaggactggct
ggtagacaaggagctaagggtgtaaaaggaaacactggtccacctggagcttgtggtcaa
acagagtattatgacgtagttggtgaaaaaggagatgcaggacctcctggacctccagga
cccaaagggcaacgtggcatgcctgggccacagggtcctcctggagatgctggtagacca
ggtgtgtcaagacctggtctgagaggtcccccaggatttcctgggccaaaaggaacaaag
ggagaaaaaggacaggtgggctcgtgtattataggccctccaggactgcctgggattact
ggcagaattggttctgttgggttgccaggtcctccgggagaaccaggtagagtaactttt
agaacaggcctaccaggactccctggacagccaggttgtgcaggacctccaggacctcca
ggagacatgggcatgaaaggtgatgaagcttgcatgtgtactgattgcagctatattccg
ggaacgcctggtctccctggttctcctgggccacgtggccaggatggcatccctggtaga
gaaggagcgccaggtcccaaaggagctccaggttctccaggtgcaccagggtttccagga
gctcaaggacctccaggttttaaaggagatcaaggacgtaagggctcaaaaggtgagcca
gggtatgtgtatccagagggaccaaaaggggagcaaggagatccagggcccaggggagac
aaagggagaaaaggatcaagtggatttctgggaagacctggctctaaaggttacaaaggt
tctaaaggtgaagagggattggctggttcaaaaggagatagaggacaacctggattgcct
ggtaaccctggttttcctggagagatggggcttcctggactgccaggatatggaccacaa
ggagtaagaggtgtcaaaggctctaaaggactgcctggtccacagggattgcctggagaa
gctggtctgaaaggagagaccagaaggatagctccattgcctgcattgccaggacctcaa
ggaccagatggcttacccggacccccaggagtgcctggtaggattggaacaagtggtcag
ccaggtgatgtggggcatccagggccaacaggtgacacaggcttcccagggcttgggttt
cctggaaatccgggcccaaaaggagacaaaggacttcctggaagcagaggggcaccaggt
tgtgaaggaaagattggagagccaggccgcgctggaaatctaggacaaccaggagagaag
ggtgacccaggcataattattccaggagagccaggcaaactaggttcaccaggaggtcgt
ggcattcctggcccaaaaggtgatactggatttccaggacttccaggcttaccagggcaa
gctggacgtgatggcaatagtggcctaagaggagatccaggctcatctggtgttcctggg
gatccaggttttccagggaaaccagctgaatgtcttactggcctgccaggtttgccaggt
gcccagggagctacaggctcaccaggaagaagaggttcactaggttctaaaggcaaacta
ggtcctcctggtttgggtatcccaggaattgatggaaagcctggggaacctggattaata
ggtctcctgggaaacacaggattacctggtctcaaggggcagtctggaaggccaggagtc
tttggtgtgccaggccctagaggagagccaggtataatggggccgttaggaattcctgga
ccccctggcaggattggaagtccaggcaaccctggtatcagaggttcttttggctctcca
gggctaaaaggaagaaaagggtttcttggagcacaaggcgaaccaggtgacaaaggtttt
cctggaccatctgaaaccttggttgtgattggaaataaaggagaacaaggctcaaaagga
gtccaaggaagaatgggcctaaaaggagaaaaaggagatgcaggtgtccaaggttcccca
ggtcttattggatctgaaggagtacctggtgtaccaggtgtcaaaggatttatgggtctt
ccagggattcctggaggacaaggatttcctggtgcaccaggaaacaaagggaacatggga
attccaggtcaaaaaggacagaagggatctcccggctttccaggaacttcgggtgaccct
ggtccaacaggctatggtggctttccgggtgaaaaaggagaccctgggcacccatctcct
ggactcccaggagaacctggtcctaagggagatccaggggctcctggggccttgggcagg
aaaggagaaaaaggatcccaaggtcagccaggacataaaggagcaccaggactacctggg
ttcagaggagaaacaggagttgctggaaatccagggagacttggacttcctggagatgtt
ggtgttaaaggacagcagggccacccaggacaacagggtgttacaggccctcctggtgct
gctggataccctggagaaaatggacttgctggtgaaagaggtaatcagggtcaggacggt
atgccgggtgccccaggactaaagggagaaccaggagcaccagggagaggaatccctggc
cttcaaggtgttcctggtcgtagaggagtcaaaggggacatggggctgcctggatttcct
gggccaccaggtatgaaaggtcatcagggtgaccaaggacccattggacctcctggctta
atgggattacctggatttcaaggagcaacaggcatggcaattactggcccaaaagggaat
agaggcattcctggtgcagatggaagaccaggtattcctggttttcaagggctgcctggt
cttcccactatgagcataaaaggaagcaaaggtgttaggggagcagatggcatacaagga
ccaatgggcccagctggtgacagtggtcctccgggtccaaaaggagtagaaggtcggcca
ggttatcctggtgctagaggggatcctggctttcttggatttccaggtgtaaaaggagag
aagggtaatcaaggaccacctggaccacgaggggcagaaggaccaatgggaccaaaaggc
caacctggtccacctggtgtctctgggagaatattctctgtccctgggagcaaggggcct
cctggactgccaggaatcccaggcacaccaggtgatcaaggaattcaagggattcctgga
ttacaaggacctaaaggagtaaaaggtctaccaggaagttttggtcgtccaggtcaacca
ggacagcctggtccaaaaggagacaggggatttccaggacaaagagggcaacctggattg
attggcttccctggcctacagggattgcctggatcaccaggtactaccaccactggccca
acaagaagaggttttatcttcactcgacatagtcaatcaacaaagattccttcatgccca
cctgggacatcacaaatctacattggctattcactgctttttgtacaaggaaatgaacga
gcgcatggacaagaccttggaacagctggtagctgcttgcagagatttaccaccatgccg
ttcttattctgcaataccaatgatgtgtgcagttttgcttctcgcaatgactattcatac
tggctgtcaactgcaacagcaatgccagtagacatggcaccaatttctggtaaagcacta
gagccccatataagcagatgcattgtctgtgaaggacctgcaatggtaatagcagttcac
agccaaacaactgcagttcctgcatgtccaggaggctggatatctctctggaagggattt
tcttttgttatgtatacaagtgctggctcagaagcttctggccaagcactggcatctcct
ggatcttgtctggaagaatttcgagccatcccattcatagagtgccatggcagggggacg
tgcaactactacacaaactcctacagcttctggttggcatcactaaatccaagaagaatg
ttcaggaaacctatgccacagacattgaaagcaggagaactagaaaatgtcatcagccgt
tgtcaggtctgcatgaagagaccagtctaa
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integrated database retrieval system
