Tympanuchus pallidicinctus (lesser prairie-chicken): 128082207
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Entry
128082207 CDS
T08967
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128082207 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128082207 (EDC4)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128082207 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
128082207 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
ApoLp-III
Uteroglobin
WDR55
INTS5_N
Motif
Other DBs
NCBI-GeneID:
128082207
NCBI-ProteinID:
XP_052542112
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MASSNSIDIEDATQHLRDILKLDRPGGSVNENQRPSSSYNGDLNGLLVPDPLVAADGPSL
AKPVHRSISLGAVQEKQVICLSGDDSSTCIVISAKDVEIVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMEKDKIQEEILVNIKRPDGTPLNTSRRIIWCPFI
PDDNEENSEEGSQTLALLHEDRAEVWDLDIIRSNNRSWPVEVPNIKEGFIVVKGHSTYLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQDEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EENDNLSIEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDMGASVPSHGSH
EEFAFPDHIADLGTEGLGSEKGSVHGSQPDLRRIADLPVPADFLSLSNDAKPKLMTPDAF
MTPSTSLQQITVSPGSSVSSLTAVTAMSSTSVTDASMSRPSEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVTAGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAPSALSAEVLEPSHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMAPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
TQRLPVKDWKAKASPRASPKLKRKGKKDDGDVNQSPRSSNNQVTPEFQEELMCVLRSQQR
ELSELRQNQMELLQRLTNHLDAIQSSLMGHMERVIDSQQEQEQRRLDRALTEGQQRNGQL
QEHLSQQLSQTLSNAVCNRLERTVREEMKKTVPQCISKSVDPVAGQLSNTIATKLTAIEG
TLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYVQQLETHMKNKKAREQEARDPLLNQLRQLISTFQSTTEQLASTIAANIHAE
VQHQLHIIVGNLQESILTQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHL
DFQSQQTHIIQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQQPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMSQVRQKLFQFLQVEPHN
TLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctccaacagcatcgacatcgaggacgccacgcagcacctgcgggatatcctc
aagctggaccggccgggaggttcagtgaatgagaaccagagaccgtcgagttcctataac
ggagacctgaatgggctgctggtgcccgatcccctggtggctgcagatggaccttcactg
gccaaaccggtgcaccgcagcatttctctgggagctgtgcaggagaagcaagtcatctgc
ctttctggtgacgacagctccacttgcatagttatatcagcaaaggatgtggaaatagtg
gccagcagtgattccagcatcaccagtaaggccagagggagcaacaaggtgaaaatacag
cctgttgctagatatgattgggagcagaagtactattatggcaatctgatagctgtttca
aactcttacctggcttatgccattagagctgccagcaatggctccgctatggtgcgagtg
ctgagcgtcagcactgcggagcggaccttgctgaagggattcacaggtggtgtggcagac
ctggcttttgctcatctcaactccaaccagctggcgtgcctggatgaggctggcaacctc
tttgtctggcgcctggccatggagaaagacaaaatccaagaggagatcttggtgaacatc
aaacgacctgacggtacccctctgaacacctctcgaagaatcatctggtgtcctttcatc
ccagatgataatgaagagaacagtgaagagggaagtcaaacgttggcattgctgcacgag
gacagggcagaggtctgggatttggacattatccgctcaaacaacagatcctggccagtg
gaagtgcctaacatcaaagaaggcttcattgtagtgaaaggccacagcacgtacctgagt
gagggagcactttctccagatggaactgtattggccacagcaagtcatgatggttttgtc
aaattttggcagatctatattgaggggcaagatgagccaagatgtcttcatgagtggaaa
ccacatgatgggaggcctctttcctgcctgctcttctgtgacaaccacaaaaaacaagat
ccagaggttcccttctggaggtttctcatcacaggagcagatcagaacagagaactgaag
atgtggtgcactgtgtcttggacctgcctgcagaccgtccgattttctcctgacatcttc
agctccatgagtattcttcccagcctgaaagtctgcctggatctctccgctgagtatctg
atactgagcgatgtgcagagaaaagtcttgtatgtgatggagctgatgcagaaccaagat
gagggcaaagcttatttcagttccatctcagagtttctcctaacccatccagtcctcagc
tttggcatccaggcagtgagccgctgccgcttaaggcacactgaagtgcttccagcagaa
gaggaaaatgacaacttgagtatagaaggtgctcagggagcaggggctgttgagtcagca
gctggcgtgctgataaaactcttctgtgtgcacaccaaagcactacaagatgtgcagatt
agattccagcctctccatagtcctgacatgggtgcatctgtgccttcccatggctctcat
gaagaatttgcctttccagatcacatagctgatctaggcacagaagggctgggatctgaa
aagggatctgtgcacggctctcaacccgacttgcgccgtatcgcggatctccctgtacca
gcagacttcctttcgctctcaaacgatgccaagcctaagctgatgactccagatgcattc
atgacaccgagtacatctctccaacagatcactgtatctccaggcagcagcgtcagttcc
ctgactgcagtcacagccatgagcagcacttctgtcacagatgcctctatgtccagacca
tcagaagacttgactgtgagccccaagatgcagctggacaccagcctcacactgagcagc
agtagcagcagcctgcaaaccagtcctaggagccattctgttcttatcccaggccttcct
gacaagctgacaccaaaggcgcctgttccagtcacagcggggaactcctctctagcgctg
gagctgcaggaagtggagcccttggtggtgcctcaggcttctcccacccgtgagcgttcg
ccggacgtcatttcctctgcttccacagccatgtcccaggacatccctgagattgcttct
gagaccttgcagcgtagctttgcagctgctccgtccgcactctctgcagaagtgctggag
cccagtcatcacgcagacagtatggcctctgcagcctcagccttgcatttgctgtctccg
aggaaccggcacaattcagagcacagccaccactctttggacatggctccggtggaggtg
gacagactgaatgctccgtccttactggagactgctttaactcaggaaaatgcatcttcg
gacagtgttgtgagtcagccatggccagcagctcctgacataaccagagaaaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagctcttcctatcat
cgacacagctaccaccttctgcagcacgacagccaggatgctagtgcagaacaaagtgac
catgatgatgaagttgcaagtttggcttctacatcaggtggatttggtgccaaagcatct
acgcagaggctgcctgtgaaggactggaaagccaaggcatcccctcgggcttccccaaag
ctaaagcggaagggcaagaaagatgacggggatgtgaaccagtcgccaagatcatctaac
aaccaggtgacaccggagttccaggaagagctgatgtgtgtgttgaggagccagcagcgt
gagctctctgagctgcgtcagaaccagatggagctgttgcagaggctcacaaatcacctt
gatgccattcagagctcgctgatgggccacatggagagggtgatcgactcccagcaggag
caggagcagagaagactggatcgagcactgacggaggggcagcagcgcaacgggcagctc
caggagcatctctctcagcagctctctcagaccctttccaatgctgtgtgcaaccgtctg
gagaggactgttcgtgaggagatgaagaagacagtaccccagtgcatttccaagagtgtg
gacccagttgctggccagctaagtaacaccattgccaccaagctcactgctattgagggg
acactgaaagagaacattaccaagctagtgaaatcaaagaacctcacagacagcgttgtg
agggcaacagctgacaccctgcagggcccaatccagtcggcctacagggaagccttccag
agcgtcgtgttgccagcctttgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacgcaggaatatgttcagcagctcgagactcacatgaagaacaag
aaggcacgagaacaggaggcccgggacccactgctgaatcagctccgacagctcatcagc
accttccagagcaccaccgagcagctggcttccaccattgcagccaatatccatgctgag
gtgcagcaccagctgcacattattgtgggcaacctgcaggagtcgattttgactcaggta
cagagagtcattaaaggagaagtgagcctggcaatgaaggagcagcaagccgctgtcact
tcgagcattgttcaggcaatgcgttcagctgcagggactcccatcccctccactcacctg
gacttccagtctcagcaaactcacatcattcagctgctccagcagggccatctcaaccaa
gctttccagcaggctctaacagcagctgatctcaacctggttctgtatgtctgtgagact
gtggacacgcagcaagtgtttggccagcagccgtgcccgctgtcccagcctgtgctgctc
tcactcattcagcagctctcctcggatttgggtactcgtacggaactgaagctgaattac
ctggaggaggccgtgatgcacctggaccacagtgaccccatcacccgggaccatatgggg
tcagtcatgagccaggtgcggcagaagcttttccagttcctccaggtggaacctcacaac
acgctgagcaagcctgcgcgccgcctgatgatcatgctgcagggcctggtcactcctggc
atgacctaa
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integrated database retrieval system
