KEGG   Tympanuchus pallidicinctus (lesser prairie-chicken): 128082252
Entry
128082252         CDS       T08967                                 
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tpai  Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04382  Cornified envelope formation
tpai04510  Focal adhesion
tpai04512  ECM-receptor interaction
tpai04518  Integrin signaling
tpai04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tpai00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128082252 (COL4A4)
   04518 Integrin signaling
    128082252 (COL4A4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128082252 (COL4A4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128082252 (COL4A4)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    128082252 (COL4A4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tpai04147]
    128082252 (COL4A4)
   00536 Glycosaminoglycan binding proteins [BR:tpai00536]
    128082252 (COL4A4)
Exosome [BR:tpai04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   128082252 (COL4A4)
Glycosaminoglycan binding proteins [BR:tpai00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128082252 (COL4A4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 128082252
NCBI-ProteinID: XP_052542187
LinkDB
Position
Unknown
AA seq 1681 aa
MALTKDSFEQIKWLIRTAWWLLIVFSAQEIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPAGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGSEGPRGKHGVDGCNGSRGDPGFPGENGYIGPRGPYGNPGQKGEKGNSVYVSYFGKGPP
GDRGDPGPPGMPGPRGSTGTTGPPGYPGQPGMPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DVGLPGPPGSPLLVGPPGAQLFKGEKGQKGLPGIPGYRGPHGPKGVPGKGEKGEKGIPGF
PGLRGSPGSDGPAGFPGIKGEMGIAGFPGRPGYPGIKGDPGEKGPPGPPGAIGTSLLPVK
GPPGDPGFPGPAGDMGSVGPSGPVGLLGRPGDDGTSLPGLPGISGAPGPQGFRGDPGSPG
TGEAIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTERGIPGEPGAKGQIGLPGRKGEKGE
KGNQGLCSCSAGPPGPRGIQGPPGTQGKKGQMGYPGRHGEKGDSGFSGTVGSPGLPGTPG
PGGQHGEKGEKGDQGRVSIKGIKGERGPTGVPGFPGQKGNDGRDGDLGLPGKKGAEGDSG
VPVPGDKGVPGVPGLPGAKGPMGLPGLGFPGPPGVRGTPGDFGDDGNIGLPGPKGQKGDT
VCITSPYPGNPGPPGFKGVQGPKGLKGLPGLPGQNGFDGPKGQQGRPGAGIPGPEGFRGT
AGDPGEEGERGPTIDGKNGAPGPPGIDGQKGVPGDTTYGPSGIPGNRGLPGPPGAQGARG
DPGIPGLQGHPGTPGFPGAKGFRGPEGDTGAPGCPGTPGPPCDTRLPGPPGLRGAIGLPG
SQGLPGYKGQKGDRGLAGPPGIKGLKGSPGSQGPPGPPGSRGLPGLPGNNGQPGFPGQTG
SKGIQGPQGFPGLPGTQGPMGISGVKGEEGSMGPPGPSGECGDMGVKGERGLPGDGGSIN
IRLEKGQKGEPGFPGENGFRGERGEKGNTGFRGAPGFPGNSGAPGLPGDHGDIGLMGFPG
SRGFPGPKGSKGIAGFKGLPGDQGDVGLPGMPGNPGLTGPEGPKGKRGDPTLLLGPQGQK
GSPGDPGLPGFCGFPGEKGSPGIQGQPGRPGSKGEPGYPGTPGFPGATGPPGLPGEPGEK
GQHGILGSPGLQGLTGSQGRKGLPGLPGLDGLHGLKGQKGSAGAPGQSETGRPGYSGEPG
PKGERGEPGWPGISIPGTPGERGFPGFPGRRGPVGPIGPRGPSPSSAPPGLPGDQGPPGL
DGIRGQPGNPGPPGETIFVRGDPGDVGIEGAPGIPGHRGLQGARGLPGNQGREGPKGPMG
IHGSRGPPGAVGQPGDQGFQGKPGPRGPTGTYSDPGEPGKTDDSCPAIPGPPGEAGHRGD
DGSIGLPGPIGHPGPQGRKGEEGSCGLPGQDGLPGAPGPPGDQGHVGEQGYTGPQGPPGQ
AGIPGPPGPHIRSSSGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPMFNTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMTPLSEEEIQPYISRCAVC
EAPAQAVAVHSQDQSIPPCPMNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPDLQFASAPLSGTLKEGQEQRKKISRCQVCLKH
D
NT seq 5046 nt   +upstreamnt  +downstreamnt
atggcgttaacaaaggattcatttgaacaaattaagtggcttatcagaactgcctggtgg
ctgctgattgttttttcagcacaagaaattgatgggggaggatatgcatacattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaagaggtcaa
cctggtgagctgggagctcaaggaccaattggatccttgggatctacaggaccagctggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggatta
cctggaagtgaaggacccaggggcaaacacggtgtagatggctgcaatggctcaagagga
gatccaggatttccaggcgaaaatggatatattggaccaagaggtccttacggaaaccca
gggcaaaaaggagaaaaaggaaattcagtgtatgtttcgtattttggaaaaggaccccca
ggagacagaggtgatcctggcccccctggtatgcccggacctagaggatcgacaggtaca
acaggcccacctggatacccaggccaaccaggcatgcccggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaagggggagccgggt
gatgttggacttcccgggccacctgggtcaccactgttagttggacctcctggagctcag
ctgttcaaaggagaaaagggtcaaaaaggactacctgggataccaggatacagagggcca
catggacctaaaggagtacctgggaaaggagaaaagggtgaaaaaggcattcctggattc
cctggattgcggggtagccctggttctgacggacctgcaggttttcctggaataaaggga
gaaatgggtattgctggttttcctgggagacctggctatccaggcatcaagggggatcct
ggagaaaaagggcccccaggtcctcctggagctattggaacttcactgcttcctgtgaaa
ggcccaccaggagatcctggatttccaggtcctgcgggtgacatggggtcagttggacct
tctggacctgtgggtctgctaggaagaccaggagatgatggaacaagtctgcctggcctg
ccaggaataagtggggcaccaggacctcaaggttttcgaggtgaccctggttcacctgga
acaggtgaagcaattccaggaagacctggatttcctggaccacctggactaccaggacag
ccaggaagacaaggcttacctggactacctagtgtaatttgtactgagagagggattcct
ggagaacctggagcaaaaggtcaaataggccttccgggtagaaaaggtgaaaaaggagaa
aaaggaaatcaaggcctctgctcatgtagtgctggtcctcctggtccccgtggtatacaa
ggacctccaggtactcaagggaagaaaggacaaatgggttaccctggaagacatggagaa
aagggtgattcaggcttttctggtacagtgggatcaccagggctccctgggacacctggt
cctggaggacaacatggtgaaaaaggagagaagggtgaccaaggaagagtttcaataaaa
ggaataaaaggtgaaagaggtcctactggggttccaggatttccaggccaaaaaggtaac
gatggcagagatggggatttaggattgcctgggaaaaaaggagctgagggtgattctgga
gtaccagtaccaggtgataaaggagttcctggagttccaggactccccggagcaaaagga
ccaatgggattgcctggtttggggtttcctggccctccaggagtcagaggtacccctgga
gactttggtgatgatggtaacattgggctgcctggtccaaagggtcagaaaggtgacact
gtgtgtattacatcaccctaccctggaaacccaggtccccctggttttaaaggtgttcaa
gggccaaagggcttaaaaggactccctggtcttcctggacaaaatgggtttgatgggcca
aaaggccagcaaggcaggccaggagcaggaattcctggaccagaaggcttccgaggcaca
gctggtgatcctggtgaagaaggtgaaagaggacctaccattgatggtaaaaatggtgct
ccaggtccacctggcatagatggccagaagggtgttccaggtgatactacatatggccct
tcaggaatcccaggcaacaggggactgccaggaccacctggtgcacaaggagcaaggggt
gacccaggcattcctgggcttcaagggcaccctgggaccccaggatttccaggtgctaaa
ggttttaggggcccagaaggtgatacaggagcaccaggctgtccaggcacccctggtcca
ccatgtgacacaagattaccagggccacctggactgagaggtgccataggcctgccaggt
tctcaaggcttaccaggctataaaggtcagaagggagacaggggtctagctgggccacct
ggaatcaaaggtctcaagggctctcctggctcacagggccccccaggtcctccagggtcc
cgaggacttccaggacttccaggcaataacggacagcctggcttcccaggtcaaacagga
agcaaagggattcaaggaccccaaggattccctggactcccaggaacacaaggcccaatg
ggaatctctggtgtaaaaggggaagaaggaagtatgggtccacctgggcctagtggagaa
tgtggggatatgggagtgaaaggtgaaagagggcttccaggagatggtggcagcattaac
attcgccttgagaaaggacaaaagggggagccagggtttcctggtgaaaatggatttaga
ggtgaaagaggtgaaaaaggaaatacaggtttcagaggtgccccaggatttccagggaac
agtggtgccccaggacttccaggtgaccacggtgacatcggactgatgggatttccggga
tcacgaggtttcccaggaccaaagggctctaaaggaattgcaggtttcaaaggactacca
ggtgaccagggtgatgttggcttaccaggaatgcctggaaacccaggactgacaggcccc
gaaggacctaaaggaaagagaggtgatccaactcttctgcttggtccacaaggtcaaaaa
gggtctcctggagatccaggattaccaggattctgtggattcccaggtgagaaaggttca
ccaggtatccaagggcaacctggaagaccaggatccaagggcgagcctgggtacccagga
acacctggatttccaggagctacaggtcctccaggattgccaggagaaccgggagaaaaa
gggcaacatggaattttgggatctccagggcttcaaggattaactggatcacaaggtaga
aaaggtcttcctggactgcctggactggatggcttgcatggactaaaaggtcaaaaaggt
tccgcaggagctccaggtcaaagtgaaacagggcgcccaggatactcaggagaacctgga
ccaaaaggagagagaggtgaacctggatggcctggtatttccattccaggcacccctgga
gaaaggggattcccaggattcccaggtagaagaggacctgttggacccattggacctagg
ggaccatctcccagtagcgctcctcctggtcttccaggtgatcaaggaccaccgggttta
gatggcatcagaggtcagcctgggaatcctggtcctcctggagagactatctttgtgcga
ggagatccaggtgacgttggtattgaaggggcaccaggcattcctgggcaccgagggcta
caaggagccagaggtcttccaggaaatcaaggaagagaaggtccaaagggtccaatggga
atccatggctcgcggggtccacctggtgctgtaggacaaccaggagaccaaggttttcaa
ggaaaacctggtcctagaggtcccacaggtacttacagtgatcctggtgaaccaggaaaa
acagatgactcatgtcctgcaatcccagggcctcctggggaagcaggacatagaggagat
gatggttcaataggattaccagggccaataggtcaccctggaccccaaggaaggaaaggt
gaagaagggtcatgtggcctgccaggtcaagatggcttaccaggagcacctggaccacca
ggtgaccaagggcatgtgggagagcaaggatacactggaccacaaggtccacctggccag
gctggtatcccaggaccaccagggccccatattagatcttcaagtggattcttgctcgtc
cttcatagtcagtcagacagagaaccactttgtccacaggggatgccaaaattatggact
ggctatagtctgctgtacctggaaggccaagagaaagctcataatcaagatcttggtctg
gcaggatcttgccttcctatgtttaataccatgccctttgcttactgtaacatcaaccaa
gtttgttactatgccagccgaaatgataagtcctactggttgtcaagtgccgctccctta
ccaatgacaccactctctgaagaagaaatacaaccatacataagcagatgtgctgtatgt
gaggctccagctcaagcagtagcagttcacagccaagatcagtcgattcctccgtgtcca
atgaactggagaagtctttggataggatattcttttctgatgcacactggatctggtgat
caaggaggtgggcagtcccttatgtcaccaggaagctgcttagaagacttcagatcagca
ccattcattgaatgccagggtcagcggggaacttgtcagttttttgctaatgaatacagc
ttctggctaacaacagtgatgcctgacttgcagtttgcatcagctcccttgtcaggaact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgtcaggtatgcctgaagcat
gattaa

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