Tympanuchus pallidicinctus (lesser prairie-chicken): 128082482
Help
Entry
128082482 CDS
T08967
Symbol
SMC4
Name
(RefSeq) structural maintenance of chromosomes protein 4 isoform X1
KO
K06675
structural maintenance of chromosome 4
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128082482 (SMC4)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Chromosome condensation proteins
Condensin I
128082482 (SMC4)
Condensin II
128082482 (SMC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_29
Crescentin
AAA_23
DUF948
ABC_tran
Motif
Other DBs
NCBI-GeneID:
128082482
NCBI-ProteinID:
XP_052542601
LinkDB
All DBs
Position
Unknown
AA seq
1300 aa
AA seq
DB search
MASRSTKTSTAAHQKGRQPVEEPTGDMQVEKQDGRQLGEGAAEAVSNEESDNRSLEEILG
SISPPPPPAMTNEAGAPRLMITHIVNQNFKSYAGEQTLGPFHKRFSCIIGPNGSGKSNVI
DAMLFVFGYRAQKIRSKKLSVLIHNSEEHTDIQSCSVEVHFQKIIDKEGDDYEVIPNSNF
CVSRTAYRDNSSVYHINGKKSTFKDVGVLLRSHGIDLDHNRFLILQGEVEQIAMMKPKGQ
TEHDEGMLEYLEDLIGSARLRDPIQTLCRRVETLNEQRGEKLNRVKMVEKEKDALEGDKN
KAIEFLSLENKMFKEKNQICQYYIYDLQKRINDLEAQKENIQKETKDINEKSSKLADEMK
SKSKALKDLEKKIDKITVFIEENKNKFTQLDLQDVEVREKLKHAKSKAKKLEKQLQKDKE
KVEELKNVPSSSEKTISDATSKKELLEKAKDKEEEKLKQVMSSLKEETREIQKEKEGKEK
ELVEFCKTVNDARSKMDVAQAELDIYLTRYNTAVSQLSEAKEALATTSDTLKQRKAAIKD
LDMKLPAAELELKEKEKKLEKLKEEELSAQDVVRNLRQKVEEAKSSLAQHRSRGKVLEAL
LEQKRSGSISGIHGRLGDLGAIDEKYDVAISSSCAALDFIVVDTIDIAQECVEFLKRTEI
GAATFIALDKMAVWKKNLAKIPTPENVPRLIDLVKVEDESFSPAFYFALRDTLVVKDLEA
ATRIAFQRDKRWRVVTLKGEIIEQSGTMTGGGGKVMKGRMGSSVVTDVSPEEINRLESEL
QRDSKRAVQCEEEKLQLEEDITKLEKNVREMRNTLEKYTASIQSFSEQEIHLKGQVKELE
ANVIAAAPDKNKQKELEKVLSSYKKDYECVSEQAGRMESEVKRLHNLIIDFNNRKLKTQQ
DKVDKINQEIDECTSAITKAQVAIKTAQRNLKKSEDSVLRTEKEIGDNEKEIRDLTEELT
TLEDKATGVLNDCKQAEEALPAVREEHRALLQEMRAIQDDEHELRKEALNIKFKIEQIDS
RISTHQSKVKYWQKEISKLSLHPIEDKPPEELPVLSQEELEAIKDPDVITNQIALLEAQC
HEMKPNLGAIAEYRRKEELYLKRVAELDDITNERDRFRQAFEDLRKQRLNEFMAGFNVIT
NKLKENYQMLTLGGDAELELVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLAL
VFALHHYKPTPLYFMDEIDAALDFKNVSIVAFYIYEQTKNAQFIIISLRNNMFEIADRLI
GIYKTHNTTKSVATNPKVIAAKGLMELGIAEHSVAQNQSE
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaggagcaccaaaacctcgacagcagcccaccagaaaggcagacagcccgta
gaggagcccaccggtgacatgcaagtggaaaaacaagacggcaggcagcttggggaagga
gcagcagaagcagtctcaaatgaggagtctgataatcggagtttagaagagattttgggt
agcatctctcctccccctcctccagcaatgaccaatgaagccggtgctcctcgtctcatg
ataactcacattgtaaaccagaacttcaaatcctatgcaggggagcaaactttgggacct
tttcataagcgtttttcatgcattattgggcccaatggcagcgggaaatccaatgtcatt
gatgcgatgctttttgtgtttgggtatcgagcacaaaaaatcagatccaaaaagctctct
gtgctgatccataattctgaggaacatacggacatccagagctgttctgtggaagtccac
ttccaaaagatcattgacaaggaaggggatgattatgaggtcattcctaacagcaatttt
tgtgtatctagaactgcctatagagataattcttctgtataccacatcaatggcaagaag
tcaacgttcaaagatgttggcgttcttcttcggagtcacggaatcgatctggaccataac
agattcttgatattacagggggaagttgaacagattgcaatgatgaaacccaaaggccag
actgaacatgatgagggcatgctggagtacttggaagatctgatagggtctgcacggctg
agagatcctattcaaactctttgtcgcagagtagagactttaaatgaacagaggggagaa
aagttaaatagagttaaaatggtggaaaaagaaaaggatgccttagaaggggacaagaac
aaagccatcgaatttctttccctggaaaataaaatgtttaaagagaaaaaccaaatctgt
cagtactacatttatgacctacagaaacgaataaatgatttggaagcacaaaaagaaaac
atacagaaagaaactaaagatattaatgagaagagtagtaaacttgcagatgaaatgaaa
agcaagagcaaagctttaaaggatcttgagaagaaaattgataaaattacagtgttcata
gaggaaaataaaaataaatttactcagttggatttgcaggatgttgaagtaagggaaaaa
ctgaagcacgccaaaagcaaggctaaaaaactggagaagcaacttcaaaaggacaaagaa
aaggtggaagaactgaaaaacgtgccctccagtagtgaaaaaaccatcagcgatgcaaca
tctaagaaagagcttcttgaaaaggcaaaagacaaagaggaggaaaaactcaagcaggtt
atgagtagtctgaaagaagaaacacgagaaattcagaaagaaaaagagggcaaagagaaa
gagctggtggagttctgtaagacggtgaatgacgcgcgttccaagatggatgtggcacag
gcagaactcgacatctacctcacccgctacaacactgctgtgtctcagctcagcgaggca
aaggaggctctggcgaccacttctgacactctgaagcaaaggaaggctgctattaaagat
ctagatatgaagttacctgcagctgagctggaattaaaggagaaagagaagaagcttgag
aagctgaaagaagaggaactgagtgctcaggatgttgttcgaaatctccgtcaaaaagta
gaagaagccaaaagttctttagcacagcaccgcagtcgaggaaaagtgctggaggctctg
cttgagcagaagaggtcggggagtatttctggaatacatggaagactgggagacctggga
gctatcgatgagaagtatgatgttgctatttcatcctcctgtgctgccctggacttcatc
gttgttgacaccatcgatattgcgcaggaatgcgtggagttcttaaagagaacggaaatt
ggagctgccacgtttatagccctggacaaaatggctgtatggaagaaaaatcttgcaaaa
atcccaacccctgaaaacgtgcctcgcctgattgacctggtgaaagtagaagatgagagc
ttttccccagctttttactttgccttacgtgataccctggtggtcaaggacttggaagct
gctaccagaatagcattccaaagagataaaaggtggagggttgtaacgctgaaaggagaa
atcattgagcagtcaggaacaatgactggtggtgggggcaaagtaatgaagggcagaatg
ggctcctcagttgtaactgatgtttctccagaagagatcaacagactggaatctgaactg
cagagggattccaaacgagcagtgcagtgtgaagaagaaaaattacaactggaagaagac
ataacaaagctagagaaaaacgtgcgggaaatgagaaatactttggaaaagtacacagcg
agcatccagagtttttccgaacaagaaattcatctaaaaggccaagttaaggaacttgaa
gcaaatgtaattgctgctgctccagacaaaaacaaacagaaggaattggagaaagtcctc
agtagttataagaaagattatgagtgtgtttctgagcaagctggtagaatggaaagtgaa
gttaaacgattacataacctcataattgatttcaataatcgtaaacttaaaacacagcaa
gacaaagttgataagatcaaccaagaaatagatgaatgtacttcagctattactaaagcc
caagtggcaatcaagactgcacaaagaaacctgaaaaagtctgaagattctgttcttcgc
acggagaaggagattggagacaatgagaaagaaattagagacttaacagaagagctgact
acactagaagacaaagctacaggggttctgaatgactgcaagcaagctgaagaagcgctg
ccggccgtgcgggaggagcaccgcgctttgctgcaggagatgagggccattcaggatgac
gaacacgaactgcggaaggaagccctcaatatcaagttcaaaattgagcaaattgatagt
cgtatttctacacatcagtcgaaggttaaatactggcaaaaggagatatcaaaattatca
ttgcatcccatagaagataagccacccgaagagctcccagtgctcagtcaagaagagctt
gaggctatcaaggatccggacgttatcactaatcaaatagctctcttggaagcacagtgc
cacgaaatgaaacccaaccttggtgctattgcagagtacaggaggaaggaggagctgtac
ttaaaacgtgtggctgaattggatgacattaccaatgagagagacagatttagacaagct
tttgaagatctcagaaagcagaggctaaatgaatttatggcaggatttaatgtaataaca
aataaactgaaggagaactaccagatgctgactttgggaggagatgctgagttagaactc
gtagacagcctggatcccttctctgagggaatcatgttcagcgttcggcctcccaagaaa
agctggaagaagatatttaacttatcaggaggagagaagactctcagttcactggctcta
gtttttgcacttcatcattacaagccaacacctctgtattttatggatgagatcgatgca
gcacttgacttcaaaaatgtatccatcgtagcattttacatatacgagcagacaaaaaac
gcgcagttcatcatcatctccctgcggaacaacatgtttgagattgcagacaggctgatt
gggatttacaagactcacaacaccaccaagagtgtggcaacaaaccccaaagtcattgca
gccaaaggactgatggagctgggcattgctgagcacagcgtggctcaaaaccagagtgaa
tga
DBGET
integrated database retrieval system
