Tympanuchus pallidicinctus (lesser prairie-chicken): 128082761
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Entry
128082761 CDS
T08967
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128082761 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128082761 (VPS8)
Membrane trafficking [BR:
tpai04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128082761 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
zf-RING_11
Clathrin
TPR_Vps41
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
WDR55
Beta-prop_HPS5
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
128082761
NCBI-ProteinID:
XP_052543229
LinkDB
All DBs
Position
Unknown
AA seq
1397 aa
AA seq
DB search
MDAAPEEGPAGSEAEPDGLACPEPSASRLSAVELDRELDSRSELIDDKEFDIPQVDTPPT
LESILNETDDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLS
LHGSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQALRLC
LGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILH
IKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVELRD
HPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPML
AFCRGDVVHFLLVKRDDTGAIHVTKQKQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDR
QTQEELETIEIPEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQIFYLGT
KSVHVMTLRSWRERIDHLLKQERLTDALALAWSFYEGKAKAVVGLSGDTSKRKAVIADRM
VEILLHYADRTLKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRTDLLFNQIYDKMSENS
VAKGIFLECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENMEACIVHMDITSLDIQQV
VLLCWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYI
SCCLAGRAYPLGDIPEDLVPLVKNQIFEFLIRLHSAEGSVDEEVYPHIRTLLHFDTREFL
NVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTL
FVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQIC
EFMYERELRYDKIIDCYLRDPVRKEEVFNYIHNILSMPGYSADEKQAVWQKALEHVEELL
LLSPCKAADLVAIHFTEQIESIIANLQDQFLLFQFLRSLLDPREGINQDLLHLPPHITEQ
FIELLCQHSPDHVLETLKVLEYCRLEETIQITQKYQLHEASSYLLEKKGDIHGAFLVMLE
RLQSKLLMLTQDDGGSAELPLLESIEDTLMKTIALCQRNSHNLNQQQREALWFPLLEAMM
SPQKLSGSSQYRYAESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVL
GMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQESA
DEIIVFSCGHLYHSLCLLSKECGAVSKDVMRWMCYKCNSSSKGGKLSENFSELKKGSGTS
LAQTGSESALDPQQIQAFDQLCRLNRGTSRLALLTELSRGGEKHGLLSVSHGDSAASSVF
HNETFQLHLAPPPLIDD
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggcgccggaggagggccccgcgggaagcgaggctgagccggacggactggcc
tgcccggagccgtccgcgtcccgcctgagcgcggtggagctcgaccgcgagctggactcc
cgcagcgagctgatcgatgacaaagagttcgacatccctcaagtcgataccccgccaacg
ctggagagcatcctgaacgagactgatgatgaagaagagtctttcattttggaagatccc
tttctcttgaacattgataacacagatacacactcctatgacacatcttctgtagcaagc
tctgacagtggggacaggacgcacctgaaaaggaagaaaaaactcccggattctctctct
ctgcatggatcagttataagactctcacttctgaaagggatttctgcccaaattgtatct
gcagcagacaaagtggatgctggtttgcctactgcaattgcagcatcaaatctgatagca
gtggggacttctcatgggctagccctgatttttgatcaaaaccaggctctacggctgtgt
ctgggcagcactgctgttggggctcagtatggggctatctctgctctcagcatcaacaac
gactgctccagactcctgtgtggctttgcaaaaggacagatcaccatgtgggatctggcc
agtgggaagctgctacgatcaataacagatgctcaccccccaggaacagccattttgcac
attaagtttacagatgacccgacacttgcaatttgcaacgacagcggaggctccgtgttt
gaactctcatttaagagggttatgggtgtgagaacgtgtgaatctcgatgtctcttcagc
ggctccaagggggaggtttgttgtattgaaccattacatgcaaaggttgaactgagagac
catcctatcacccagtattcactgctggccatggcctccctgacaaagatactggttatt
ggcctgaagccatctttgaaagtgtggatgacttttccctacggtcgtatggacccttcg
agtgtccccctcctggcgtggcactttgtggctgtacagaactcagtgaaccccatgctt
gcgttttgtagaggtgatgtcgttcattttcttctggtaaagagggatgatactggtgca
atacatgtcactaagcagaagcagctccatcttcactatgacctcatcaacttcacttgg
ataaactcacgaacagcagtgcttctggacagtgtggagaagctgcatgtcatagatcgt
cagacacaggaggagttggagaccatagagattccagaagttcagctggtctacaacagc
agccacttcaagtccctggctacaggaggcaatgtcagcgaggcgctggcattggttgga
gagaaagcttgttatcagtccatcagcagctgtggtggccagatcttctacctgggaact
aagtcagttcacgtcatgacattgaggagctggagagagagaattgatcaccttctgaaa
caagagcgtctcactgatgccctggctcttgcttggtccttttatgaagggaaagcaaag
gctgtggtaggcttgtctggggacacaagcaagcggaaagcagtcattgcagacagaatg
gttgagatccttcttcattatgctgatcggactttgaagaaatgccctgaccaaggaaaa
atccaggttatggagcagcactttcaggatgtggtgcctgtcatagttgattactgcctt
ctgctccagcgcacagatctattatttaaccagatctatgataagatgagtgagaattct
gtagccaaaggaatctttctggagtgcttggagccatatatcttaagtgataagctgatg
ggaatcacagctcaagtgatgaaagacttgctccttcacttccaagacaagaacaggttg
gaaaatatggaagcctgcattgtgcatatggatatcaccagcctggacatacaacaggtg
gtccttctgtgctgggaaaaccatctctatgatgccatgatctatgtctacaacagtgga
atgaatgacttcatcagtcccatggagaagctgttcaaagtcattgctcctccactgaat
gctgggaagtctctcacagatgagcaggtggtaatgggcaacaagctgctcgtgtatata
agctgctgcttggcaggccgtgcgtatccattgggtgatattcctgaagatctggtacct
ctggttaaaaatcagatctttgagtttctcatccggttgcactcagcagagggatctgtg
gatgaggaggtctaccctcacattcgtaccttgctgcactttgacactcgggaattcctt
aatgttcttgctttgacttttgaagactttaagaatgacaagcaagctgtggaatatcaa
cagcgcattgtggacatacttctgaaagtcatggtagagaattctgacttcaccccgtcg
caagttggctgtctctttactttccttgcccgtcagctggccaagcccaacaacacgctg
tttgtgaacagaacactttttgatcaggtccttgaatttctttgcagtccagatgatgac
tcccggcattcagagaggcagcaggtcctgttagaactgctgcaggcaggagggatagtg
cagtttgaagagagccgtctcatccaaatggcagaaaaagctgaattctatcagatttgt
gagttcatgtatgaacgagagcttcgctacgacaaaatcattgactgctacctgcgtgat
ccagtgagaaaggaagaagttttcaactatattcacaacatcctgtccatgcctggctac
agtgctgacgaaaagcaggcagtgtggcagaaagctttggaacatgtagaggagttattg
ctactcagcccatgtaaagcagctgacttggtggccatccacttcactgagcagattgag
agcatcattgcaaaccttcaggaccagttcttactcttccaatttctaaggagtctgctt
gatccgagagaaggcatcaaccaagacctcctgcacctaccaccccacatcacggagcag
ttcatcgagctgctgtgtcagcacagccctgaccatgttctggagacactgaaagtcctg
gagtactgcaggctggaggaaaccatccagataacccagaaatatcagctccatgaagct
tcctcatatttactggagaagaagggagacatccatggtgcctttctggttatgctcgag
cgattgcagagcaagttgctgatgcttacacaggatgatggaggttcagcagaactcccc
ttgctcgaaagcattgaagataccctaatgaaaactattgccctttgccagaggaattca
cacaacttaaaccagcaacagcgagaggccctctggtttcccctgctggaggctatgatg
tccccacagaaattgtctggctcttcacagtaccgatatgctgaatccttgaagagtttg
acgatgcaagtgctgaacaacatggctgcgtttattgctcttccttcaatcctgcagaga
attctacaggatccagtttatggaaaagggaaacttggagaaattcaaggtctcgtcttg
ggaatgctggacacatttaactatgaacaaactcttttagagacgaccacaaaccttcta
aaccacgatctccactggtccctgtgtaacctaagagcttctgtcactagagggcttacc
ccaaagcaggattattgctgcatttgtctacagcagtacaaaaggaggcaagaaagcgct
gatgaaatcattgttttcagctgtggccacttataccattccctgtgcctgctcagtaag
gagtgtggggcagtaagcaaagatgtgatgcggtggatgtgctataaatgcaactcgagc
agcaagggtggaaaactgagcgagaacttctcagagctgaagaaaggaagtggaacctcc
ttagcacagacagggtcagagtctgcattggatcctcagcaaatccaggcctttgaccaa
ctctgccgactcaaccgtgggacctcgcggttagctctcctgactgaactgtcccgcggt
ggggagaagcacgggctgctcagtgtttcccatggggactctgctgccagcagcgtcttc
cacaatgagaccttccagctgcacctggcccctccaccactgatagatgattaa
DBGET
integrated database retrieval system
