Tympanuchus pallidicinctus (lesser prairie-chicken): 128082805
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Entry
128082805 CDS
T08967
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04136
Autophagy - other
tpai04140
Autophagy - animal
tpai04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128082805 (ATG16L1)
04136 Autophagy - other
128082805 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128082805 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128082805 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
tpai03029
]
128082805 (ATG16L1)
Membrane trafficking [BR:
tpai04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
128082805 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
128082805 (ATG16L1)
Mitochondrial biogenesis [BR:
tpai03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
128082805 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG16
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_RFWD3
eIF2A
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Ge1_WD40
INO80F
PALB2_WD40
WD40_like
HTH_6
Lipoprotein_6
HEF_HK
FUSC
V_ATPase_I
WH_CYT4
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
128082805
NCBI-ProteinID:
XP_052543355
LinkDB
All DBs
Position
Unknown
AA seq
624 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAAELRRRDRLQRQAFEEIVAQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHEISPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPRDDD
IEVLADETSDTAEETSPVRAVSRTPSKRLSQPAGGLLDSITNIFGLSESPLLGHQSSDAA
RRRSLSSFPAPQDNAEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRTESIVKELELLGRITALDLNSERTELLTCSRDDLLKIIDLRVGAVK
QTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYVWNVLTGKLERTLAKHHSSSINAV
AWSPAGAHVVSVDKGNKAVLWSEF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgccgccggcttccctccctggaagcggcacatcgcggcggag
ctgcggcggcgggaccggctgcaacggcaggccttcgaggagatcgtggcgcagtataac
aagctgctagagaagtcggatctgcacgctgtgctggctgataagctgcaagcagagaag
tatgatatgcagagcagacatgaaatcagtccaggacacgatggcacatggaatgatgct
cagttgcaggaactggcacagctgaagataaagcaccaagaggagctgactgagctacat
aagaaacgtggagagttggcccagtctgtaattgatctgaataaccaaatgcagcagaag
gacaaagagatgcagatgaatgaagcaaagattgcagagtatttgcaaaaaatctctgaa
ctggaaacagagtgccaggaactacgcagcaagctacaggatctcgagcgagctaatcag
acactgaaagatgaatatgatgctctccagatcaccttcaatgccttggaggagaaactg
aggaaaacaactgaagataaccaggagctggtctcacgttggatggcagagaaagcacag
gaagccaatcgcttgaatgcagaaaatgaaaaggattcgaggaggcgacaagccaggctg
caaaaggagctggcagaagctgccaaagaacccctgcctgttgaacccagggatgatgat
attgaagtgcttgcagatgaaacctctgacacagctgaggagacatctccagtgcgagct
gtcagccgaacacccagtaagcgactctcccagccagctggaggccttctggattctatc
actaatatctttggtctgtctgaatctccccttttgggacatcagtcttccgatgctgcc
aggaggcgttctctgtcctcgttccctgctccccaggacaatgcagagccacatccaggt
gccagtaaagaagtgagagtgcccactactgccatctgtgtctttgatgcacatgacggg
gaggtgaacgccgtgcagttcagccctggctcccggttactggcaacaggaggcatggac
cgcagggttaagctctgggaagtcttgggagataggtgtgagcccaaaggttccctctct
ggtagtaatgctgggattacaagcatagagtttgatagtgctggttcttacctcttagca
gcttcaaatgactttgccagcagaatctggacggttgatgacaatcgattacggcacact
ttgacgggtcacagcggtaaggttctgtccgccaagttcctgctggacaacgcgcgcatt
gtgtcaggaagccacgaccggaccctcaagctctgggacctccgcagcaaagtctgtata
aaaacagtgtttgcaggatctagctgcaatgacatcgtatgcactgagcagtgtgtaatg
agtggacattttgataagaaaatccgtttctgggatatcaggactgaaagcatagtaaaa
gagctggagctgcttgggaggatcacagctctggacttgaactcagagcgaacagagctt
ttgacctgttcccgtgatgatctgctgaagatcattgacctgcgggttggtgctgtcaag
cagacgttcagtgcccagggattcaaatgtggctctgactggacaagagttgtgttcagt
cctgacggtaactatgtggctgctggttcagctgatggtgccctctatgtttggaatgta
ctcactgggaagttggagagaactcttgccaagcatcacagttcttctatcaatgcagtc
gcgtggtccccagcgggtgcccatgtggtcagcgtggacaaaggaaacaaggctgtcctg
tggtctgaattttga
DBGET
integrated database retrieval system
