Tympanuchus pallidicinctus (lesser prairie-chicken): 128082963
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Entry
128082963 CDS
T08967
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128082963 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpai03041
]
128082963 (DDX5)
03009 Ribosome biogenesis [BR:
tpai03009
]
128082963 (DDX5)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128082963 (DDX5)
Spliceosome [BR:
tpai03041
]
Complex A
U1 snRNP components
U1 related factors
128082963 (DDX5)
Complex B
128082963 (DDX5)
Ribosome biogenesis [BR:
tpai03009
]
Eukaryotic type
Pre-60S particles
Helicases
128082963 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
P68HR
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
128082963
NCBI-ProteinID:
XP_052543671
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MPGYSSDRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPD
VVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSGRSR
GDRRDRYSAGKRGGFSSFRERENFERTYGALGKRDFGAKAQNGAYSTQSFSNGTPFGNGF
AAAGMQAGFRAGNPAGAYQNGYDQQYGSNIANMHNGMNQQQYAYPATGAAPMIGYPMPAS
YSQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccagcgacagggatagagggtttggagcccctcgttttggaggaagt
agagccggtccactttctgggaaaaaatttggaaaccctggggaaaagcttaccaaaaag
aaatggaatttggatgaactgcccaaatttgaaaagaacttctatcaagaacatcctgat
gtagttagacgtactgcgcaagaggttgagcagtacaggtcaagcaaagaagtcacagtt
aggggccataactgtccaaaaccaataataaacttctatgaagctaactttcctgcaaat
gttatggaagtgattcagaggcagaacttcaccgagcctactgcaattcaagcacaagga
tggccagttgccttgagtggattggatatggttggagttgcacagactggatcagggaaa
acactgtcttacttgttgcctgccattgtgcatataaatcatcagccattcctggagaga
ggagatggacctatttgtcttgtgctggcaccaactcgtgaactggctcagcaagtgcag
caggtagctgctgaatatagcagagcgtgtcgcttgaagtctacatgtatttatggaggt
gctccaaagggaccacaaattcgtgatttagaaagaggtgtggaaatttgcattgcaaca
cctggaagacttatagacttcttagaagctggaaagaccaatctcaggaggtgcacttac
cttgtccttgatgaagctgacaggatgcttgacatgggatttgaacctcaaatcagaaag
attgtggatcagataagacctgacaggcagactctgatgtggagtgccacgtggccgaag
gaagttaggcagctggctgaagacttcttaaaagaatatgtacacatcaacattggtgca
ttagaactgagtgcaaatcacaacatccttcagattgttgatgtgtgtcatgatgtagag
aaggacgacaagcttattcgtttgatggaagaaatcatgagtgagaaggaaaacaagaca
attgtttttgtagaaaccaaaagacggtgtgatgaccttaccaggaaaatgaggagagat
gggtggccagcaatgggtattcatggtgataaaagccagcaggagcgcgactgggttcta
aatgaattcaaacatggaaaagcaccaatcctgattgctacagatgttgcatccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggac
tatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagcatatacattc
tttactcctaacaatattaagcaagtaaatgacctcatctctgtgcttcgggaggctaat
caagccatcaaccctaaattgcttcagttgattgaagacagaggttcaggtcgttcccga
ggtgaccgacgtgacagatactctgcgggcaaaaggggtggatttagtagctttagagag
agggagaactttgagagaacttatggtgcactagggaagagagactttggagccaaagct
caaaatggggcctacagtacccagagtttcagtaatggaactccttttggaaatggcttt
gcagctgcaggcatgcaagctggcttcagggctggtaaccctgcaggagcttaccagaat
ggctatgatcagcagtatggaagtaacattgcaaatatgcacaatggcatgaaccaacag
cagtatgcatatcctgccactggtgctgctcctatgataggttacccaatgccagcgagt
tattctcaataa
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