Tympanuchus pallidicinctus (lesser prairie-chicken): 128083057
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Entry
128083057 CDS
T08967
Symbol
ABCA5
Name
(RefSeq) cholesterol transporter ABCA5
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128083057 (ABCA5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tpai02000
]
128083057 (ABCA5)
Transporters [BR:
tpai02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
128083057 (ABCA5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
RsgA_GTPase
AAA_29
AAA_16
MMR_HSR1
AAA_23
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
128083057
NCBI-ProteinID:
XP_052543897
LinkDB
All DBs
Position
Unknown
AA seq
1647 aa
AA seq
DB search
MAPNAPREAGVWRQTKALLFKNCLVKCRTKKSSVQEVLFPLFFLFWLILMSMMHPHRWYD
EVPNSNLGVLDPSVLVNLVVGYTPPTRMAREIMRKVAYDNFEDAGLITEEYLSEEDLEKA
SASKSSNFVGVVFKDAMSYQLRFPDMVAMASVYTESRASCSSLRMSCESITYWTSGFAAL
QACIDAAIIQLKTNQSVWEQLELTRATAMAEAAVMEIDNFPRAIILIYLVIAFSPFGYYL
AIHIVAEKERKLKEFLKILGLHDTAFWLSWVLLYTSLIFVMSILMAVIATASSLFPQSSA
FVIFLLFFLYGISSVFFALMLTPLFKKSKHVGIVEFLATLAFGFVGLNIVLLEDFPKSFV
WLFSPLCQCSFLIGIAQVMHLEDYEDGATFSNLNHGPYPLFISLILLVLDSIFYLLAAVY
LDQVIPGEFGLRRSSFFFMKPSFWSKRRKNYEELYESSINGNLSCSEVVEPVPSEFQGKE
AIRISCVQKTFRKKGETVEALRNLSFDIYEGQITALLGHSGTGKTTLMNILCGLCPPTDG
FVSVYGHRVSEIDEMLEVRRIAGVCPQSDIHFDILTVEENLSLFAAIKGIPQNDLIQEVQ
KVLLDLDMQPIRDNQAKKLSGGQKRRLSVAIAVLGNPKVLLLDEPTAGMDPCSRHIVWNL
LKNRKANCVTVFSTHFMDEADILADRKAVISQGMLKCLGSSLFLKSKWGIGYRLSMHIDA
YCNTEATTSLIRQHIPTASLIQENTQQLVYTLPLRDMDKFAGLFSDLDTHSHLGVISYGV
SMTTLEDVYLKLEVEAEIDQADYSVFSSQQAQEEADMSSQDDMEQSLLMLPEARSAPQSN
AALWKQQVSTIARLHFLSLKRENKCVRVMLLLFLIFLVVQILFFLTHHYIKHSLAPLRLS
PELYLLRPGEEHHKYRSRLLLQNSTDSDIDDVVRSLGSMNVLLEMFNGSDYISAAPHSAG
LNVYDLQSQQNYVFTIVFNSTMVHSVPVLMNIISNLLLRALNVTESIQVWSHPFVQDLPD
TVFKLEIYFEAVLLGIIVTGMPPYFAMENAENRRLRAYTQLQIAGLYPSAYWAGQALVDL
PLFFSILVLMLGSLFAFHYGIYFYAGKFMAVLFCLVGYVPSVVLFTYVVSFTFKKVQNTK
EFWSFIYSVTALLCMVVTEVAFFLDFDTVTTALHCAFCTFVPIYPLIGCLICFIKVSWTG
KQKRGEYYDPWDRLLVAVIAPYLQCIVWLFLLRCFELKSGGRTIREDPFFRKCSKKAKSW
KLPDAPCNEDEDVRAERLRVKEALSNPNSEEVPAILVSSLHKEYDERREFLLGRRIKKVA
TKHVSLCVRKGEILGLLGPNGAGKSTLINMLVGEVEPTSGQVLMGGCSPGGNSEDGSIQF
VGYCPQTNPLWPDITLQEHFEIYGAIKGMSQADVKQAIKCISSALDFKDHLQKTTKKLGV
GLKRKLCFALSMLGSPRVTLLDEPSTGMDPKAKQRMWKAIRAAFKNKERAAILTTHYMEE
ADAVCDRVAILVAGQLRCIGTVQHLKSKFGRGYFLEMKLKDTADVQQVEYLQRQILHIFP
NANRQESFASILAYKIPREDVQSLSHCFSKLEEVKYAFNIEEYSFSQATLEQVFVELAKE
QEEEEGSFGTLNSTLWWDRTQEDRVVF
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaatgctccgagagaagcgggggtgtggaggcaaaccaaagcactcctgttc
aagaactgcttggtgaaatgcaggaccaagaagagcagcgtccaggaggttcttttccct
ctcttcttcttgttctggctgatcctgatgagcatgatgcacccacatcggtggtacgac
gaggtccccaactccaacctgggcgtgctggacccctcagtgctggtgaacttggtggtg
gggtacacaccacccaccaggatggccagggagatcatgaggaaggtggcttacgataac
ttcgaagacgcgggcctcatcacagaggagtatttaagtgaagaggacctggaaaaggcc
agtgcttccaaatcctccaacttcgtgggtgttgtgttcaaggatgccatgtcctaccag
ctgaggtttcctgacatggtggctatggcttctgtttatacagagtcaagagccagctgc
tccagcttgagaatgagctgcgagtccatcacatactggacctcaggatttgcagctctg
caagcgtgcatcgatgcagccattatacagctgaagaccaaccagtccgtgtgggagcag
ctcgagctgacaagggccacggcgatggcagaggcagccgtgatggagatcgacaatttt
cctcgtgccatcattttgatttacctcgtcattgccttctcgcccttcgggtattatttg
gccattcatattgtggcagaaaaggagaggaagctgaaggaattcttaaaaatactgggg
cttcatgatactgccttttggctttcctgggtgctgctgtacaccagcctgatcttcgtc
atgtccatcctgatggctgtgatcgccacggcctcctctctctttccccagagcagtgcc
tttgtgatattcctccttttcttcctgtatggcatctcctccgtattctttgccctgatg
ctgacgcctctctttaagaagtcaaagcacgtgggtatcgttgagttcctggccacgctg
gcttttgggtttgtggggctgaacatcgtcctgctggaagacttccccaaatcctttgtg
tggctcttcagccctttgtgccaatgcagcttcctgatcggcatcgcacaggtgatgcat
ttagaagattatgaggacggagcaacgttttcaaatctaaatcatggtccttacccactt
tttatctccttaattctactggtgctggacagcatattttacttgctggcagctgtctac
ctcgatcaggttatcccaggggagtttggactgcgccgctcgtcgtttttctttatgaag
ccctcattttggtcaaagcgcaggaaaaattacgaggaattgtatgagagcagcatcaat
ggcaacctcagctgcagcgaggtggtcgagcccgtgccctccgagttccaggggaaggaa
gccatcagaatcagctgtgttcagaaaacattcaggaaaaaaggggaaactgtggaggct
ctcagaaacttgtcctttgacatctacgaggggcagatcacagctctgctggggcacagc
ggcactgggaagacgacactgatgaacatcctctgtgggctgtgtcccccgacagacggg
tttgtctctgtctatggacacagagtctccgaaattgacgagatgctcgaagtgcggcgc
atcgcaggcgtgtgcccacagtctgacatccacttcgatatattgacggtggaggagaat
ctctccctcttcgctgccattaaaggaatacctcagaatgacttgatacaggaggtgcag
aaggtgttgctggatttggatatgcagcccatccgagataaccaagccaagaagctcagc
gggggacagaagcgacggctgtcggttgctattgctgttcttgggaacccaaaggttttg
ctgctggatgaaccgacagcaggcatggatccgtgctcacggcacattgtctggaacctc
ctgaagaacagaaaggcgaactgtgtgacggtcttcagcactcacttcatggacgaggca
gacatccttgctgatcgtaaagctgtgatttctcaagggatgctgaaatgccttggatct
tctctctttctgaaaagcaaatggggaattggctaccgcttgagcatgcatattgatgcc
tactgcaacacggaagccacaacctcactgatcaggcagcacatccccacagccagcctg
atccaggagaacacccagcagctcgtctacacgctgccactccgggacatggacaagttt
gcaggcttgttctccgaccttgacacccattcccacctgggcgtgatttcttacggcgtt
tccatgacgacactggaggatgtctacctgaagctggaagttgaggcagagattgaccaa
gcagattacagtgtgttcagctcccagcaggcgcaggaggaggcagacatgagctcgcag
gatgacatggagcagagcctgctgatgctgccagaggccaggtcagccccacagagcaac
gcagccctgtggaagcagcaggtttccaccatagccaggcttcacttcctcagcctcaag
cgtgagaacaaatgtgtcagagtgatgctgttgcttttcctgatttttctcgtcgttcaa
attctgttttttctcacacaccactacatcaaacattcgctcgctccgctcaggctctcc
ccagagctgtacctgctgaggcccggggaggagcaccacaagtacaggagccggctgctg
ctgcaaaactccacagactcggatatcgatgacgttgtccgctctcttggcagcatgaac
gtgctgctggagatgttcaatggcagcgattacatttcagctgcgcctcacagtgcagga
ttgaacgtgtacgacctccaatcccaacagaactacgtttttacaatcgtcttcaacagt
accatggtgcactccgtgccagttttgatgaacatcattagcaacctccttctacgtgct
ctgaacgtcactgagagcatccaggtctggagccacccctttgtccaggatcttccagac
acggttttcaaactagagatctatttcgaagctgtgctgttgggaatcattgtgactggc
atgccaccctactttgccatggagaatgcagaaaaccgtaggctcagggcgtacacacag
ctgcagatagcagggctctacccgtcggcatactgggctggccaggctctcgtggacctc
ccactgttcttctccatcctcgtcctgatgctgggcagcctctttgccttccactacggc
atttatttctacgctggcaagttcatggctgtgcttttctgcctcgttggctatgttcca
tcggtcgtgctgttcacctatgtggtctccttcacatttaagaaagtccaaaacacaaaa
gagttttggtcatttatatactcagtgacagctttgctgtgtatggttgtcactgaagtg
gcctttttcctggactttgacacggtgaccactgccctgcattgtgccttctgcaccttc
gttcccatttatcccctcattggctgtctgatctgtttcatcaaggtctcatggacaggc
aaacagaagagaggggaatactatgacccgtgggataggctcctggtagcagttatagct
ccctatttacagtgcatcgtgtggctcttcctgctgcggtgcttcgagttgaagagtgga
gggaggaccatcagagaggacccattcttcaggaaatgctctaaaaaagcaaagtcctgg
aagctgccagatgctccatgcaatgaagacgaggatgtgcgggcagagaggctgcgagtg
aaggaagcattgagcaaccccaacagcgaggaggtgccagcaatcctggtcagcagcctg
cacaaagagtacgacgagaggagggagttccttctggggaggaggataaagaaagtggcc
acgaaacacgtctcactctgcgtcaggaaaggggaaatcctggggttattgggacctaat
ggagctgggaaaagcacgctgattaatatgcttgttggagaagttgagccaaccagtggg
caggtcctgatgggaggttgctctcctggagggaacagcgaagatggctccattcaattt
gtggggtactgtcctcaaaccaacccgctctggccagatatcaccctgcaggagcacttt
gaaatttatggtgctatcaaaggaatgagtcaggctgatgttaagcaagcgataaaatgc
atctcaagtgccctggattttaaggaccacttgcagaagacaacgaagaagttgggcgtg
gggctgaaacgcaagctctgctttgccctgagcatgctgggcagccctcgtgtcacgctg
ctggatgaaccctccaccggcatggaccccaaggccaagcagcgcatgtggaaggcgatc
cgagcagccttcaaaaacaaggagagggctgccatcctgaccacacactacatggaggag
gcagatgccgtgtgcgaccgtgtggccatcctggtggctgggcagctcaggtgtataggc
accgttcaacacctgaagagtaaattcggcagagggtacttcttggaaatgaaattgaag
gacacagcagatgtacagcaggtggagtacctgcagaggcagatcctgcacatcttccca
aatgcaaaccgacaggaaagctttgcttctatcttggcatataaaatccctagagaagac
gtacagtcactttcacattgtttttccaagttggaagaagtgaaatacgcctttaacatc
gaggagtacagcttttctcaggcaactctggagcaggtctttgtggagctggccaaggag
caggaggaggaggagggcagctttggcacactgaacagcacactgtggtgggaccggaca
caggaggacagggtggtgttctga
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integrated database retrieval system
