Tympanuchus pallidicinctus (lesser prairie-chicken): 128083327
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Entry
128083327 CDS
T08967
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03030
DNA replication
tpai03420
Nucleotide excision repair
tpai03430
Mismatch repair
tpai03440
Homologous recombination
tpai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128083327 (RPA1)
03420 Nucleotide excision repair
128083327 (RPA1)
03430 Mismatch repair
128083327 (RPA1)
03440 Homologous recombination
128083327 (RPA1)
03460 Fanconi anemia pathway
128083327 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpai03000
]
128083327 (RPA1)
03032 DNA replication proteins [BR:
tpai03032
]
128083327 (RPA1)
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128083327 (RPA1)
Transcription factors [BR:
tpai03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
128083327 (RPA1)
DNA replication proteins [BR:
tpai03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
128083327 (RPA1)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
128083327 (RPA1)
MMR (mismatch excision repair)
128083327 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
128083327 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
128083327
NCBI-ProteinID:
XP_052544378
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MSGRLSEGAIAAIMQGENVCKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNPLVEEERLSAHCICQVNRFIVNSLKDGRRVVILMDLDVLKTADMVGGTVGNPVPYNEG
QGQQRSSAPTANTAPNKPQQQNGNLSVAGSAAPKYHAPSNQFSKASAPSSVKTPGGTQSK
VVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQAD
KFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFV
SISDLENTPKDSIVDVIGICKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGN
EAEKFDGSRQPVIAIKGARVSDFGGRSLSVMSSSTVVVNPDSPEAFKLRGWFDSEGQLLE
CASISDVRGGSASGVNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACPS
QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQN
ATFLGELKEKNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYS
KRLIASIRRNAQLG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcggctgagtgaaggcgccatcgcggccataatgcagggagagaacgtctgc
aagcccgtgctgcaagttattaacacacgggctatcgccacaggaaatgggcctcctcgg
taccgagtgctgatgagcgatggggtgaacacgctctcctcattcatgctggcgacacag
ctgaacccccttgtggaagaggaacgtttatcagcacactgtatttgccaggttaacaga
ttcattgtcaacagcttgaaagatggaaggagagtggttatactgatggatttagatgtc
ctgaaaactgctgatatggttggtgggactgttggcaacccagtgccttacaacgaaggg
cagggacagcaacgttcttcagctccaacagccaacacagcacccaacaaaccacagcaa
cagaatggcaatttgtcagtagcaggttctgctgctccaaagtaccacgcgccctcaaac
cagtttagtaaagccagtgctcccagctcagtgaagacaccagggggaacgcagtccaaa
gtggtgcccattgccagcttgaatccataccaatctaagtggaccatttgtgctcgtgtt
acccaaaaagggcagatccgcacatggagcaactcccgtggtgaagggaagctcttctct
atagagctggttgatgagagcggtgagattagagctacagctttcaatgatcaagcagac
aagttctttcctctcattgaactgaacaaggtatattattttaccaaaggcaatttgaag
actgctaacaagcaatatacagctgttaagaatgattacgagattacattcactaatgag
acttcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgta
tccatctctgacttggagaacacacccaaagactcgattgtcgatgtaattggaatttgt
aagagctatgaagatgtcactaaaattgtagtgaaagctagcaatagggaggtatcgaag
aggaatgtgcatctgatggatacatcagggaaactggtgacagctacgctatggggaaat
gaggctgagaagtttgatggttccagacaacctgtgatagccatcaaaggagcccgggtc
tctgattttggtggtagaagcctgtctgtcatgtcatcgagtacagtggttgtcaaccct
gatagcccagaggctttcaagctccgaggatggtttgactccgaggggcagcttctggaa
tgtgcctccatctctgatgtgaggggtgggtcggcatcaggggtgaataccaactggaaa
actttgtatgaagccaaatcagagaggttgggacaaggagataaggcggattattttagc
tgtgtgggcacaatagtacatctgcgcaaagagaactgcatgtaccaggcctgtccctct
caggattgcaacaagaaagtgatagaccagcagaatggactgtatcgctgcgagaagtgc
gaccgcgagttccccaacttcaagtaccgcatgatgctgctggtgaccattgcagactct
ctagattaccagtgggtgacttgcttccaagagtcagcagaattcattcttgggcaaaat
gctactttcctgggagagctgaaggaaaagaacgagcaggcgtttgaagaagtctttcag
aatgcaaatttcaacacgtatgagttcaagatcagagtaaaactggagacgtacaacgat
gaatctcgtattaaggctacagcgctggacgtcaaacctgtaaactacagagaatacagc
aagaggttgatcgcgagcatcaggagaaatgctcagctaggatga
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integrated database retrieval system
