Tympanuchus pallidicinctus (lesser prairie-chicken): 128083419
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Entry
128083419 CDS
T08967
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128083419 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128083419 (LIG3)
Enzymes [BR:
tpai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128083419 (LIG3)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
128083419 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
DUF4403
Motif
Other DBs
NCBI-GeneID:
128083419
NCBI-ProteinID:
XP_052544575
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MPAGSAALTRAARALGLGCPRALLSWPRSWSHCSALPGSRCPPSVSAAARCVLWKPGGVA
ASLLVPPPVHAWPCRACAAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPN
PFTESGGDMKEWYHVKCMFEKLEKARATTKKIEDITDLEGWEELQDGEKELITNLISEAT
SKAASTPKKKATVQAKLTATGQISSPQKDPLANINPKKFSGFTAKPKNSEEVSANSSHNS
SLSAKNCDPKHKDCLLREFRKLCAMVADKPSYNVKTQIIQDFLKKGSGGDGFHGDVYLTI
KLLLPGIIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETVRLFFEQSKSCPPA
AKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQDITRRCTGNDLKCIIRLIKHDLKMNAGAK
HVLDALDPNAYEAFKASRNLQDVVERVLRNQQDAERTPGVKRALSVQASLMTPVQPMLAE
ACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQ
AFPGGHSMILDSEVLLIDNKTGKPLPFGSLGVHKKAAFQDANVCLFVFDCIYFNDVSLMD
RPLRERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDIKGNYE
PGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSKGGMMSIFLMGCYDPKSEKWCTVT
KCAGGHDDATLARLQTELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAPVWEITGA
EFSKAEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKAEFSVVAGEEEE
STAGSSGENEGNSRSSTPHKMTKTLPNKSPAKAKKPEGTKAVAESPQKPEEKRGEKRKAS
EIEDNGKKLLLDIFTGVKLYLSPSVKDFNKLRRYFIAYDGDLVSEYDTASATHVIGDVDE
NPGAKQVSPKWIWECIRKRRLVAPC
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgggcagcgcggcgctcactcgggctgctcgggcgctcgggctcggctgcccc
agggcgctgctctcctggccgaggtcctggtcgcactgctctgccctgcccggctcccgc
tgcccgccgtcggtgagtgcggctgcccgctgtgtgctctggaagccgggcggcgtcgcc
gcgagtctcctcgtccctccacccgtgcacgcgtggccgtgccgggcctgcgcggcggcg
gaggacatggccgaacagaggtactgcgtggattacgccaaacgcggcacggccggctgc
aagaagtgcaaggagaagatcgtgaaggggatggtgcgcatcgggaagatcgttcccaac
cctttcacggagtctggcggggatatgaaggaatggtaccacgtcaagtgtatgtttgag
aagctggagaaggcccgggcaaccaccaagaaaattgaagacatcacggatttggaaggg
tgggaagagctgcaggatggggagaaagaactgatcaccaacctcatctcagaagctaca
tccaaggctgcaagtacaccgaagaaaaaagcaacagttcaggctaagctcactgccact
ggacaaataagcagtccccagaaagatccattggctaatatcaatccaaagaagttctct
ggcttcacagccaagcccaagaattctgaagaggtgtctgcaaactcttcccacaactcc
agcctgtctgcaaagaattgtgatccgaagcacaaagactgcttgctgcgagagttcagg
aagctctgtgccatggttgctgacaagcctagttacaatgtgaaaacacagatcatccag
gacttcctgaagaagggaagtggaggagatggttttcatggtgatgtatacctgaccatt
aagctactcttaccaggcatcattaaaattgtttacaacttgaatgataagcagattgtg
aagctgttcagtaggatttttaactgcagccaagaagaaatggtccgggacctggaacag
ggagacgtttctgagacagttcgcctcttctttgagcagagcaaatcttgtcctccagca
gccaaaagcctcctgaccatccaggaggtcgatgagtttctcatccagctgtccaagctt
actaaggaagatgaccagcaaagcgtgctgcaagatatcactcgcagatgtacaggcaac
gacctgaaatgcatcatcaggctaattaagcatgacttgaaaatgaacgccggcgcaaag
catgtgctggatgctctggatccaaacgcttacgaggcgttcaaagcgtcgcgcaacctc
caggacgtggtggagcgagtcctgaggaaccagcaggacgctgagaggacgccaggtgtg
aagcgagcgctcagcgtgcaggcctctctgatgaccccagttcagcccatgctggctgaa
gcctgcaagtcaatagagtatgccatgaagaagtgccccaatggcatgtatgcagagatc
aaatacgatggtgagagggtgcaggtccataagaacggggatcacttcagctacttcagc
cggagcctcaaacctgtcctgcctcacaaagtagcccactttaaggacttcatcccccag
gctttccctggtgggcacagtatgatcctggattcagaagttcttctaattgataataaa
actggcaagccacttccttttggatctcttggtgtacataagaaagctgctttccaagat
gccaacgtttgcttgtttgtgtttgactgcatctatttcaatgacgtcagcctgatggac
aggcctctgcgtgagcgccgtaaattcctgcacgataacatggttgaaatccccaaccgg
atcctgttctcagagatgaagcacgtcacaaaagcttcagatctggcagatatgatcaca
agagtcatccgtgagggattggaaggactggtgttgaaagacataaagggtaattacgaa
ccaggaaagcggcactggctgaaagtgaagaaggattacctaaatgagggtgcaatggct
gacacagcagacttggtggtgctgggagctttctatgggaaaggcagtaaaggtgggatg
atgtccatcttcctcatgggctgctatgaccccaagagtgagaagtggtgcactgtgacc
aagtgtgctggtggccacgatgatgccaccttggcccgtctgcaaacagagctggatatg
gtgaagatcagcaaggatcctagtaaaattccaagctggctgaaaataaacaaaatctac
tacccagacttcattgtcccagatccaaagaaagctccagtgtgggagattacaggggct
gagttctccaaagctgaagcccacactgcagatgggatctccattcgcttccctcgctgc
actcgcattcgagatgacaaagactggaagtcagccaccaacctcccgcagctgaaggag
ctgtaccaactctccaaagaaaaggctgagttcagtgttgttgctggggaggaggaagag
tccacagctggcagcagtggagagaatgagggaaattccaggtcttccacaccacacaag
atgactaaaactctccctaacaagtcccctgcaaaagccaagaaaccagaaggcaccaaa
gcagtcgctgaatcccctcagaagccagaggagaaacgaggagagaagcgaaaagcatct
gagatagaagacaatggaaagaagctgctgctggatatattcactggtgtgaagctctac
ttgtcaccctctgtgaaggacttcaacaaactccggcgctacttcatcgcatacgatggc
gacctcgtgtcagagtatgacacagcctcagcaacacacgtgattggggacgtggatgag
aaccctggtgctaagcaggtgtctcccaaatggatctgggaatgcatccggaaacggaga
ctggtggccccctgctag
DBGET
integrated database retrieval system
