Tympanuchus pallidicinctus (lesser prairie-chicken): 128083433
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Entry
128083433 CDS
T08967
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03440
Homologous recombination
tpai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128083433 (BRIP1)
03460 Fanconi anemia pathway
128083433 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128083433 (BRIP1)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128083433 (BRIP1)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
128083433 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
128083433 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
HBB
Motif
Other DBs
NCBI-GeneID:
128083433
NCBI-ProteinID:
XP_052544624
LinkDB
All DBs
Position
Unknown
AA seq
1462 aa
AA seq
DB search
MSSDVSQYTIGGVKILFPCKAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSA
LSWQQALYEKSLLKSSCEKEDRKEPAASPPCCCVCHSLSKSSEEAAGASHGAACSSNHET
GGSVKTGGQQTDAECKENNTLASKLSAKKRASVCGNESDDFQVDRKRIRPLETEQQVRKR
HCFSKEVQLVDAVEVYNQRKNGELVVHSEKSVKNTSPKTLSIPCTECSCSSGKETRKDAG
NTKKKANGDQTFIPKIFFGTRTHKQIAQISRELQRTAYSGVSMTILSSRDYSCIHPVVSS
SSSNRNELCVELLEGKHGKSCLYYHGVHKLTEHYALHSAHNTYQAWDIEDLVSLGKKLRA
CPYFAARELMVGADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDSAREAVSYS
VTESQLNAAREELDFMVNNNIRQKDHEHLRAVCYSLTNWLRASSSQLVETGYETSCKVWS
GKEMLNHFHEMGITNISFPILQKHLSAVLEKEEKISMFGKEELVEIPIVSSATQIVLKGL
FMVLLYLFKDNSRFADDYRVALQQTYAWTNENQPDVSDTSAFLAKTKHRKNLRHKTAVHM
LNFWCLNPAVAFSDLNDVRTIVLTSGTLSPMDSFSSELGVKFSIQLEASHVVRNSQVWVG
TIGAGPNGRKLCATFQHTETFEFQDEVGALLLSVCQRVGQGILCFLPSYKLLDKLKDRWM
HTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIKFKGEKDGALLIAVCRGKVSEGL
DFCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKTTRGLLSGSQWYEIQAYRALNQAL
GRCIRHRSDWGALILVDDRFRNNPNKYITGLSKWIRQQVQHHENFGSALESLHAFAERNQ
KGIDFSSQGSNEFSHVPLNSKELSSASQQEATIHLSPDVPVKTEEQSLVPGTHLTTTIDS
INPEPSNQPSNITAIMQQSGQKVDVESHSHNATQRRKHMDSKPRRPATKTEREKKSDRTN
SDFMKEHCCFKPLTSTPLPVATNCMSTASSKQRKNVNSASELIGGVNQCQSSFTLEHKQS
IPESHLETTDFSVKNTEAPVAEEHLDEQKLHTEPSSELPSVGGKPELSVLDVSAEAEDED
ESLYFTPELYDDTESEEQEMRPLDPDENQIECGKPTVADDLFVINTSKTLSEPKAITNDD
VRNTGLLGTMLNDISKNSAVNIEKMTNGKEAEQVESQEVDTKKRKISLSRSRNKGLKVQR
QYRRGKSTVRARGNTCEKKKENQQQPCKRGLYCIICGAEILPKAEGILRKTCYGDIEMKV
ILKLFRSTHVRSKESSNNCTCELDVTSDDDNMMLVITDVASLSHLKETLKIYQMPVKSKG
TNASLSLNAVWNEKEYSLTSYLQCRNCTVQSMSPCPLIGAEVIHFSNKAQSWVWLLPSSV
RYCLLLQNPQKRKAGNSDYSLS
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgacgtgtcacaatatactattgggggagtgaagattttgttcccttgcaag
gcttacccttcacagcttgctatgatgaatgctatcgttaagggcttaaataacaggcag
cactgcttgttggagagccccacaggaagtggcaaaagcttggcattactttgttctgca
ttatcatggcagcaggctctgtatgagaaatcactgctgaaatcatcatgtgaaaaggag
gacagaaaggagccagcagcctccccaccgtgttgctgtgtttgtcattccctatccaag
agcagcgaggaggctgcaggagcgagtcatggtgctgcgtgttccagtaatcatgaaaca
gggggctctgtaaaaactggaggccaacaaacagacgcagaatgcaaggaaaacaatacc
ctagcttcaaaattgtctgccaaaaaaagggcatctgtatgtggaaacgagagcgatgac
tttcaagtagacaggaagaggattcgtcctttagaaactgagcagcaggttagaaaacgt
cattgcttttcaaaagaggtgcagctggttgatgctgtagaagtttataatcagagaaaa
aatggggagctggttgttcactctgaaaaaagtgtaaaaaacacttctcccaaaacgctt
tccatcccttgcacagagtgttcctgttcctctggaaaagaaactcgtaaagatgctggt
aacacaaagaagaaagcaaatggagatcagacgttcattcccaaaatattttttggaacg
cgcacgcacaaacaaattgcccagattagcagggagttgcagaggacggcgtattccggt
gtctctatgacgattctgtccagccgggattacagctgtattcacccggtggtgtccagt
agtagcagcaacaggaatgaactgtgtgtagaattactggaaggaaagcatggcaagtcc
tgtctttactatcatggtgttcataaactcactgaacactatgccctgcactctgcacat
aacacataccaggcttgggacattgaggatctagtgagcctgggaaagaaacttcgtgcc
tgcccatactttgcagccagagaactcatggtgggggcagatattgtattttgtccttat
aactacctcctagatccacagataagggagagtatggaaattaacctgaaaggccaggta
gtcattttggatgaagcccataatattgaggacagtgctcgggaggcagtgagctacagt
gttacagaaagtcagctgaatgctgctcgagaagagctagatttcatggtcaataacaac
atcagacagaaggatcatgagcacctacgggctgtgtgctactctttgacaaactggcta
cgggcaagctctagtcagctggtagaaacagggtatgaaacctcctgtaaggtttggagt
ggaaaagaaatgctcaaccattttcacgaaatgggaataaccaatattagttttcccatt
ttacagaaacacctttctgctgtcttggaaaaagaagaaaaaatatcaatgtttggtaaa
gaggagcttgttgagatacctatcgtgagctctgccactcagattgtgctgaaagggtta
ttcatggttcttctgtatctttttaaagataacagcaggtttgcagatgattacagagtt
gctttgcaacaaacttacgcttggacaaatgaaaaccaacctgatgtttcagatacaagt
gctttccttgcaaagaccaaacatagaaagaatttgcgacataaaactgcagttcacatg
cttaatttttggtgcttgaatcctgctgtggctttttcagacctaaatgatgtcagaaca
attgttctgacctctggtacgctctctccaatggattcattttcttctgaacttggcgtg
aagttttccattcagctggaggccagtcatgttgtccggaactcacaggtttgggttggc
accattggagcagggccgaatggtcggaagctgtgtgccacgttccagcatacagagacc
tttgagttccaagatgaggtgggagcacttctactttcagtgtgtcaaagagttggccaa
ggaattctgtgttttttgccatcctataagctgttggacaaattgaaagatcgctggatg
cacactggcttgtggagaaacctggagcttgttaaaacagtcattgcagagcctcaagga
ggagcaaaaagtgacttcgatgaactgctgaaaatatactacgatgcaataaaatttaaa
ggagaaaaagatggagcactcctaatagctgtgtgcagaggaaaagttagtgaaggcttg
gatttctgtgatgagaatgctcgagcagttataaccataggtattccgttcccaaatgtg
aaagaccttcaggttgaattaaagaggaagtataatgatcagcataaaactacaagaggc
cttttatcagggagccagtggtatgaaatccaggcttacagggctctgaatcaggccctg
ggaaggtgtataaggcataggagtgattggggtgcccttatcttagttgatgaccgcttc
cggaataaccctaacaagtacataactggattatctaaatggattcgtcaacaagtccag
catcatgaaaattttggtagtgcacttgaatccttacatgcatttgctgaaagaaaccag
aaaggcattgatttttcatcacagggtagcaatgaattttcccatgtacctttaaattca
aaagagctgtcatcagcttctcaacaggaggcaactattcacctgtcaccagatgttcct
gttaaaactgaggagcaaagtttggtcccaggaactcatttaactacaaccatcgactca
attaatcccgaaccatcaaatcagccaagtaatatcacagcaataatgcagcaaagtggc
cagaaagttgatgtggagagtcattctcacaatgcaacacaaagaagaaaacatatggac
tccaaacccagaaggcctgcaactaaaacagagagagaaaaaaagagcgatcggactaat
tctgattttatgaaagagcactgctgctttaaaccactgacttcaacacctttgcctgta
gccacgaactgcatgtccacagcaagcagcaaacaaagaaagaatgtgaacagtgctagt
gaacttattggtggtgtaaatcagtgccagtcatcattcactttagaacataaacaaagt
ataccagagtcacatttggaaacaactgatttttcagtcaaaaatacagaggctccagtt
gctgaggagcatcttgatgagcaaaagcttcacactgagcccagtagtgagcttccttca
gtaggagggaagcctgagctttcagtgttagacgtgtctgcagaagctgaggatgaggat
gagagcctttacttcactccagagctctatgatgatacagaatctgaggaacaggaaatg
agaccactagatccagatgagaatcagattgaatgtggaaaacccacagtagctgatgat
ctttttgtaatcaatacctcaaaaacactaagtgagccaaaagcaattactaatgatgat
gtcagaaacacaggtttacttggaacaatgctgaatgatatcagtaagaatagtgcagtt
aatattgaaaagatgactaatggaaaagaagcagaacaggtagaatctcaagaggtggac
accaaaaaacggaaaatcagtctttccagatcaagaaataaaggattgaaagttcagaga
cagtacagaagaggaaaatctactgttagggcaagaggcaacacctgtgaaaaaaagaag
gaaaaccaacaacagccttgcaagagaggactttattgtattatctgcggagcagaaata
ctaccaaaagcagaaggcattttgagaaaaacttgttatggtgatatagagatgaaagta
atcttgaaactcttcagaagtacgcatgtaagaagtaaggaatccagtaataactgtacc
tgtgaactagatgtcacttcagatgatgataacatgatgttggtcatcacagatgttgca
agtctcagtcatcttaaagaaactttgaagatttatcagatgccagtgaaaagcaaaggc
acgaatgccagtttatctttaaatgcggtttggaatgagaaggaatattctctgacaagt
tacttacagtgcaggaactgcacagtccagtcaatgtctccgtgccctttgataggagct
gaggttattcatttcagcaataaagcacagtcatgggtctggctgctcccatcgtctgtt
cgttattgcttactgctacagaaccctcaaaaacggaaagcaggcaattcagattattct
ttatcttga
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integrated database retrieval system
