Tympanuchus pallidicinctus (lesser prairie-chicken): 128083434
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Entry
128083434 CDS
T08967
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128083434 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpai04121
]
128083434 (TRIM54)
Ubiquitin system [BR:
tpai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128083434 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
RING_XB3-XBAT31
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-B_box
TRIM_CC
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
CYP38_PsbQ-like
Prok-RING_4
DUF5799
RHH_9
Zn_ribbon_FGT1_2
CagA
CoiA_N
FlgN
GH123_cat
Motif
Other DBs
NCBI-GeneID:
128083434
NCBI-ProteinID:
XP_052544627
LinkDB
All DBs
Position
Unknown
AA seq
377 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSGAGPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICRTIEENGRRQKQHVGLRFDSLCSILEERKKELLQSVTREQE
AKVQRVRGLIRQYGDHLEASSKLVETAIQAMEEPQMAVYLQHSKELLKKITDMSKVSMSS
RPEPGYESMDHFSINVDHVAEMLRTIDFQPEVLGEDDGDGPTDSSEGVGDEENLEAPEAA
EDVGQRQKPLSSPHGQH
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgcggtggggctgaagccgctgctagcggaagcgcgcagcatggagagcctg
gagaagcagctcatctgtcccatctgcctggagatgttcaccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctccaacccg
ctgtggcagtcgcggggttccggcgccgggccgtccgggggacggttccggtgcccgtcg
tgccgccacgaggtggtgctggaccggcacggggtgtacgggctgcagcggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtccgcgcgccccctgcacgcgaaggcg
gagcaacatctgatgtgcgaggagcacgaggacgagcgcatcaacatctactgcctgcgc
tgcgaggcgcccacctgctcgctctgcaaggtgttcggcgctcacaaggactgcgaggtc
gcccctctgcccgccgtataccagcgccagaagagcgagctgagcgacggcatcgccatg
ctggtggcggggaacgaccgcatccaggccatcatcactcagatggaggagatctgccgc
accatcgaggagaacggccgccggcagaagcaacacgtggggctgcgcttcgactcgctc
tgcagcatcttggaggagcgcaagaaggagctgctgcagagcgtcacccgcgagcaggag
gcgaaggtgcaacgcgtgcgtggcctcatccgacagtatggggaccacctggaggcctcc
tccaagctggtggagacggccatccaggccatggaggagccccagatggccgtgtacctg
cagcactccaaggagctcctgaagaagatcacagacatgtccaaggtgtcgatgagcagc
cgccctgagcccggttatgagagcatggaccacttctccatcaatgtggaccatgtggct
gagatgctgcgcaccattgacttccagccagaagtgctgggtgaggatgatggggacgga
cccacagacagcagtgagggtgtgggggatgaggaaaacctggaggcacctgaggctgct
gaggatgtggggcaaaggcagaagccactgagctctccccatggtcagcactga
DBGET
integrated database retrieval system
