Tympanuchus pallidicinctus (lesser prairie-chicken): 128083451
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Entry
128083451 CDS
T08967
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128083451 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpai03041
]
128083451 (PRPF8)
Spliceosome [BR:
tpai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128083451 (PRPF8)
Complex C
U5 SnRNP specific factors
128083451 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
128083451
NCBI-ProteinID:
XP_052544667
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPTPMAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcttcccgtaccgcggcggctgcgcgccggtgccgaccccgatggcaccg
ctgcccgactacatgtctgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggaaaagaggaaattcggcttcgtggacgcgcagaaggaggac
atgcctcccgaacacgtccggaaaatcatccgcgaccacggcgacatgaccaacaggaag
ttccgccacgacaagcgcgtctatctgggtgctctgaagtacatgcctcacgctgttctg
aagctcttggagaacatgcctatgccctgggagcaaatcagagatgttccagtcctgtat
cacatcacaggagccatctcttttgtgaatgagattccctgggttatagagccagtgtac
attgcacagtgggggtccatgtggattatgatgaggagagagaaaagggacagacgtcac
ttcaagagaatgagatttcccccatttgatgatgaagaacctccactggattatgctgat
aacatcctagatgtggagcccctggaagcaattcagcttgaactggatccagaggaagat
gccccagtactggactggttctatgaccaccagccactgaaagacaatagaaagtatgtg
aatggttctacctaccagcgctggcagttcactctgcccatgatgtccacgctgtatcgg
ctggccaatcagctgctcactgacctcgtggatgacaactatttctatttgtttgacctg
aaagcatttttcacttccaaggcgctgaacatggctattcctggaggtcccaagtttgag
cctcttgttagagacatcaatctgcaggatgaagactggaatgagtttaacgacatcaac
aaaattatcatcaggcagccaatcaggacagagtacaaaattgctttcccatacctgtac
aataaccttccccaccacgtccacctgacctggtatcatactccaaacgttgttttcatt
aaaacagaagatcctgatctcccagctttttactttgacccgctgatcaaccccatttca
cacaggcattctgttaagagtcaggaaccactgcctgatgatgatgaagagtttgagtta
ccagagttcgtggaacctttcttgaaggataccccgctctacacagacaacacagccaat
ggcattgccctgctgtgggccccacggccattcaatctgaggtctgggaggactcggaga
gctctcgacatcccactggtcaagaactggtatcgtgagcactgcccagctggccagcca
gtgaaagtacgagtctcctatcagaagctgctgaaatactacgttttgaatgccctcaag
cacagaccccctaaggcccagaagaagaggtacctattccgctccttcaaggctacgaag
tttttccagtcaacaaagctggactgggtggaagtaggcctgcaggtgtgtcgccagggc
tacaatatgctgaacttgctgatccacagaaagaacctgaactaccttcacttggattac
aactttaacctgaagccagtgaagaccctcaccactaaggaaaggaaaaagtcccgtttt
ggtaatgctttccatctgtgccgagaggttctgcggctgaccaaattggtggtggacagc
catgtccagtacaggcttggaaatgtagatgcatttcagttggcagatggcttgcagtac
atctttgcccatgttggtcagctgacagggatgtacagatacaagtacaaactaatgagg
cagattcgtatgtgcaaggacctgaaacatctcatctactacaggtttaacacagggcct
gtgggcaaaggtccaggctgcggcttctgggctccaggctggagagtgtggctgtttttc
atgaggggcatcacgccactgctggaacgctggctggggaatctgctggccaggcagttt
gaaggccgtcactcaaagggtgtagcaaagactgtcacgaagcagcgtgtggagtctcac
tttgacctggagctgagggcagctgttatgcatgacattctggacatgatgccagaaggg
atcaaacagaacaaagccagaaccatcctgcagcatctgagtgaggcttggcggtgctgg
aaggccaatatcccctggaaagttcccgggctgccaactcctattgagaacatgatcctg
aggtatgtgaaggcaaaagctgactggtggacaaacacagctcactacaacagagagcgt
atccgtcggggtgccactgtggacaagactgtctgtaagaagaatctgggccggctgacc
agactctacttaaaagctgagcaggagcggcagcataattacctgaaggatgggccttac
atcaccgcagaagaggccgttgctgtgtacacaaccacagtgcactggctggaaagcagg
aggttctcacccattccattccccccgttgtcctacaagcacgataccaagttgctcata
ttggccctggagaggctgaaggaagcttacagtgtgaaatctcgtctgaatcagtcacag
agggaggagctgggcttgattgagcaggcttatgacaatcctcatgaagctctgtccaga
atcaaacgacaccttttaactcagagagccttcaaggaggttggcattgagttcatggat
ctgtacagccacctggttcctgtttatgatgttgagcccttggagaaaatcacagatgct
tatctggatcagtacttgtggtatgaggctgataaaagaagactcttccctccttggatc
aagcctgctgacactgaacctcctccgctgttagtgtacaagtggtgccaaggcattaat
aatctgcaagatgtttgggaaacaagtgaaggtgaatgcaatgtgatgctggaatctcga
tttgagaagatgtatgagaagattgacctgaccttactcaacaggctgctgcgtcttatt
gttgatcacaacattgctgactacatgacagcaaaaaacaacgtggtgatcaactacaag
gacatgaatcacacaaactcctacgggattattcgtggattgcagtttgcttccttcatt
gtccagtattatgggcttgtgatggacctgctggtgctgggtctgcaccgtgccagtgaa
atggctggacctccccagatgcccaatgacttcctcagcttccaagacattgcaactgag
gtggcccatcccattcgccttttctgcagatacatcgaccgcattcacatcttcttcagg
tttacagcagatgaggcaagggacttgattcagcggtacctgacagagcatccggatccc
aacaacgagaacattgtaggctacaacaataagaagtgctggcctcgggatgctcggatg
cgcctcatgaagcacgatgtcaaccttggccgtgctgtgttctgggatatcaagaaccgc
ctgcctcgatccgtcaccacggtgcagtgggagaacagcttcgtgtctgtttacagcaag
gataaccccaacttgctgttcaacatgtgtggttttgagtgtcgcattttgcccaaatgc
cgcaccagctatgaggagttcacccacaaggatggtgtctggaacctgcagaatgaggtc
accaaggagcgcacagctcagtgcttcctgcgtgttgatgatgagtctatgcagagattt
cacaacagagtgaggcagatcctcatggcatctggctctacaaccttcaccaagattgtc
aataagtggaatacagctctgattggcctgatgacatatttccgggaagctgttgtaaat
actcaggagctgcttgacttgctggtgaagtgtgagaataaaatccagactcgaatcaaa
attggtctgaattccaaaatgcctagccgttttccacctgtggtgttctacacccctaaa
gagctgggaggtctgggcatgctctctatgggacatgttctcatcccacagtctgacctg
aggtggtccaagcagaccgatgttggcattactcattttcgctcagggatgagtcacgag
gaggaccagctcatcccaaatttgtatcgttacatccagccgtgggagagcgagttcatt
gactcacagagagtgtgggcagaatatgctctcaagcgacaggaggccatagcccagaac
aggcggctgacactggaagatctggaggactcttgggacagaggaattcctcgtattaat
acccttttccagaaggaccggcataccctagcttatgataaaggatggagagtcaggact
gacttcaagcagtaccaggtcctgaaacagaacccattctggtggacgcatcaacgccac
gatgggaagctgtggaacctgaacaactaccgcactgatatgatccaagcactgggcggc
gtggaggggatcctggagcacactctgttcaagggcacttacttccccacatgggagggt
ctcttctgggagaaggccagtggctttgaggagtccatgaagtggaagaagttgacaaat
gcccagaggtcgggtttgaatcagattccaaacagaagatttactctgtggtggtctcct
accattaacagagccaatgtatacgttggctttcaggtgcagctggatttgacaggtata
tttatgcatggcaagatccccacgctgaagatttctctcattcagattttccgagctcac
ttgtggcagaagatccacgagagcattgtgatggatttgtgtcaggtgtttgatcaggag
ctggatgctctagagattgaaacagtgcagaaggagacaatccatcccagaaaatcatac
aagatgaattcctcatgtgcagatatcctcctctttgcttcctacaagtggaacgtgtca
cgtccatcattgcttgcggattctaaagatgtgatggacagcaccaccactcagaagtac
tggatagatatccagctgcgctggggagattatgattcccatgatatcgagcgctatgca
agagccaagttcctggactacactacagacaacatgagtatctatccatcccccactggc
gtgctcattgccattgatctggcctataatttacacagtgcatacgggaactggttccct
ggtagcaaacctctgatccagcaggctatggctaaaattatgaaagcaaatcctgcactg
tatgtgctgagagaacgaatccgcaagggcttgcagctgtactcatctgagcccacagaa
ccctacctttcctctcagaactatggggagctcttctccaaccagatcatctggtttgtg
gacgacaccaatgtgtacagagtgaccattcacaagacttttgaagggaatttgaccaca
aaacctatcaatggagccattttcatcttcaaccccaggaccgggcagctcttcctgaag
atcatccacacatctgtgtgggcaggacagaagcgtctcgggcagctggccaaatggaag
actgctgaagaggtggctgccttgatccgctcacttcctgtggaggagcagcctaagcag
atcatagtgactcgaaagggcatgctggacccacttgaggtgcacctgctggatttcccc
aatattgtgatcaaaggctccgagttgcagctgcctttccaggcctgcctgaaagtggag
aagtttggtgatctcatcctgaaggctactgaacctcagatggttctcttcaatctctac
gatgactggctgaaaaccatctcttcctacacggcattctcacgtctgattctcattctc
cgagcactgcatgtgaataatgacagagccaaagttattctgaaaccggacaagacaacc
ataacagagcctcaccacatctggccaaccctgacagatgaggagtggatcaaggtggag
gtgcagctgaaagatctgatccttgctgactatggcaagaagaacaatgtgaacgttgca
tccctaacgcaatcagagatccgagacatcatcctgggcatggagatctctgccccctct
cagcagagacagcagattgcagaaattgagaagcaaaccaaggagcagtcgcagctgaca
gccacacagacccgcactgttaacaaacatggggatgaaatcatcacctccacaaccagc
aactacgaaacccagactttctcctccaagactgagtggcgagtcagagcgatttccgct
gccaatctccacctgagaacaaaccacatttatgtttcatcagatgacataaaggaaaca
ggctatacatacattcttcccaagaatgtgttgaagaaattcatctgcatctcagatctg
cgagcccagattgcaggttacctttatggagtgagtcctcctgataatccccaagtgaag
gagatccggtgcattgtgatggtaccccagtggggaacgcaccagactgtgcatctccca
gggcagctgcctcagcacgaatacctcaaggaaatggaacctctggggtggattcatacc
caacccaatgagtccccgcagctgtcgccgcaggatgtcaccacccatgccaaagtcatg
gctgacaacccctcctgggatggagagaaaactatcatcatcacctgcagttttacacca
ggttcctgcacactgacagcctacaaactgaccccaagtggctacgagtggggcaggcag
aacacagacaaagggaacaaccccaagggctacctgccatcccattatgagagggtgcag
atgctgctgtcagatcgattcctcggcttcttcatggttccagcacagggatcctggaac
tacaacttcatgggtgttcgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttttaccacgaggtccatcgtccttctcacttcctcaacttcgccctgctg
caggagggggaggtttactccgccgacagggaggacctctatgcctga
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integrated database retrieval system
