Tympanuchus pallidicinctus (lesser prairie-chicken): 128083452
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Entry
128083452 CDS
T08967
Symbol
SCARF1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128083452 (SCARF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128083452 (SCARF1)
Membrane trafficking [BR:
tpai04131
]
Endocytosis
Phagocytosis
Scavenger receptors
128083452 (SCARF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
128083452
NCBI-ProteinID:
XP_052544668
LinkDB
All DBs
Position
Unknown
AA seq
974 aa
AA seq
DB search
MPGGHEGHGLKQPQGAVGWAMGQCPVGAVPCVRGLSPVPCIPLAAKVRNRQGCGIPCLLL
PPAPLAWGWDASSRVSSGRNQGWWEEEAEPQERNPQTDRRMDRRCCPGGMASTRLLLCLQ
LWLWVHSSAQELDPNGRNVCKVGSLAVNLACCPGWKQEGRECTAALCEGEEACGPEEVCV
RPGMCRCKPGFFGADCSSPCPAQYWGHDCKRRCLCHPGGTCEAESGRCTCNPERWGELCQ
FRCPCGPHGRCDPTTGACRCEPGWWGPDCKKQCQCNLATSRCDPLTGHCHCRLGWWGRKC
RFKCSCNLSPCAQETGNCKCKAGFWGSACQWHCDCLRGSCNPLNGHCSCEPGFQGRSCQD
PCPAGTYGSQCVHSCGNCKHNQPCSSVDGFCLECQPGWNGTLCKERCTPGFYGQGCLQPC
PHCRQGDICDAETGSCPRCEPGWTGPSCNSSCPAGTFGDGCQLLCPECVWGNCDPVSGDC
LCQAGYWGASCNDTCPEGFFGVNCSSPCQCSRGTCHPAQGNCILSLTDHAALAAAILIPL
LLLLLCVACCCCGAGPADARDRAAVPDDDVVARMKHHVQGVLANISAMMPCFTLNSSKLP
KVTVSHHDAEIPFNPSFIESPSAAWASDSSFSSFDTDNEGPEYSVPPREGVPLLSGAELQ
AGVSPPSEALPDPTAFSSEDVSQPFTIPRTSSIAKAKRPSVSFAEGTKFSTAETPSPGRK
PKALWGPSKLSLQAGDVGTEIPAEQAGSDGYESPDPLSKGDESHRPSPRATPGGRRRMVT
STRHVAQRVEALEAAAKRGSWDGKRKEPNVTTIYMTVGTAGQDPKAEGGVEGPVQAVLKR
LGSLQRGRWAAKEEPMVRRSMEGIQKPPRRALAQRRDSANGCKQRESVPGAPGELCPGKQ
QHPPGKRQSFPLESTKSTGGQDGVGEGLGAAGSGKSLELALSVETKGQVAQEEEPKYENV
SSRNEDAPTNPVTT
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggggacatgaaggacatgggctcaaacagcctcagggggcagttgggtgggcc
atggggcagtgcccggtgggtgctgttccctgtgtgagggggctgagccctgtgccgtgc
attcccttggcagcaaaggtcaggaacagacaaggctgtggcattccctgcctcctcctt
ccccctgcacccctggcgtggggctgggacgcctcctcccgcgtttcctcaggaagaaac
caaggctggtgggaggaagaggctgagccacaggagagaaacccacagacggacagacgg
atggacagacgctgctgccctggcgggatggcaagcacccgcctgctgctctgcctgcag
ctgtggctgtgggtgcacagctctgcccaggagctcgaccccaacggcaggaatgtctgc
aaggtgggcagccttgccgtgaacctggcgtgctgccccggctggaagcaggaagggcgg
gagtgcacagctgcactctgcgaaggggaggaagcctgcgggccggaagaagtgtgcgtg
agacctgggatgtgccgctgcaaacccggcttctttggtgcagattgcagctccccctgc
cctgcgcagtactggggtcacgactgcaagcggcgctgtctgtgccaccccggtgggacg
tgcgaggcggagagcgggcgctgcacctgcaaccccgagcgctggggagagctgtgccag
ttccgctgcccctgcggcccccacggccgttgtgaccccacgactggagcctgccgctgt
gagccgggctggtggggtcctgactgcaagaagcagtgccagtgcaacctcgccacctcg
cgctgcgaccctctcaccgggcactgccattgccggctgggctggtggggaaggaaatgc
agattcaagtgctcctgcaacctctcaccctgcgcccaggagacgggcaattgcaaatgc
aaggctggtttttgggggtcggcgtgccagtggcactgcgactgtctgcgtggttcctgc
aaccctctcaatgggcattgcagctgtgagccaggtttccagggcaggagctgccaggac
ccctgcccagcagggacgtatgggtcccagtgcgtgcacagctgtgggaactgcaagcac
aaccagccctgttcatctgtggatggcttctgcctggagtgccagcctggctggaatggg
accctgtgcaaggaacgctgcacacctggcttctatggccaaggctgcctccagccctgc
ccacactgccggcaaggggacatctgtgatgcagagaccggttcctgcccacgctgtgag
cctggctggacaggacccagctgtaacagctcctgccctgcagggacgtttggtgatgga
tgccagctgctgtgccctgagtgtgtctggggaaactgtgatcctgtgtcgggtgactgc
ctctgccaggctggctactggggagccagctgtaacgacacctgcccagagggctttttt
ggggtgaactgttcctctccttgccagtgctcacgaggaacctgccaccctgcacagggc
aactgcatattgagtctgacagaccacgcagctctggctgctgccatcctcatccctctc
ctcctgctgctgctttgtgttgcttgctgctgctgcggtgctggccctgcggatgccaga
gacagggcggccgtgccggatgacgacgtggtggccaggatgaaacaccacgtgcagggc
gtgctggccaatatcagtgctatgatgccttgcttcaccctcaacagctccaagcttccc
aaagtcacagtttcccaccacgatgcagaaatccccttcaaccccagcttcatcgagtct
ccatcagctgcatgggcttcagacagctccttctcctccttcgacaccgacaacgaaggg
ccagagtattccgtccctcccagagaaggggtcccactgctgtcaggggccgagctgcag
gccggggtgtccccccccagcgaggcgctccctgaccccaccgccttcagctctgaggat
gtctcgcagcccttcaccattccccgcacctccagcatcgccaaggccaagcggccctct
gtctcctttgctgaggggacgaaattcagcacagcggagacccccagccctgggcggaag
ccaaaagccctttgggggccatccaagctgtccctgcaagcaggagatgtggggaccgag
atccccgctgagcaggcaggcagtgatggttatgagagccctgatcccctcagcaaaggg
gacgaaagccaccggccatcacctcgggccacaccagggggccgccgacggatggtcacc
agcaccagacacgtggcccaaagggtagaagccctggaagcagctgcaaaaaggggcagc
tgggatgggaagaggaaagagcccaatgtcaccaccatctacatgacggtggggacggct
gggcaggaccccaaagctgaggggggtgttgaaggtccggtgcaggccgtgctgaagcgg
ctgggcagcttgcagagaggaaggtgggctgccaaggaggagcccatggtgaggaggagc
atggaaggcatccaaaaaccaccccgccgggccctggcacagcgtagggattcggcaaat
ggctgcaagcagagggagagtgtgccgggggctcccggtgagctgtgccctggaaaacag
cagcatcctcctgggaagagacagtcgttcccactggaatcaacaaaaagcactgggggc
caggatggggttggtgagggcctgggtgctgcaggaagtggcaaaagccttgagctggcc
ctaagcgtggaaacaaaaggccaggttgcccaggaggaagagccgaaatatgagaatgtg
agcagcagaaatgaggatgcaccaaccaaccctgtgaccacctga
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