Tympanuchus pallidicinctus (lesser prairie-chicken): 128083535
Help
Entry
128083535 CDS
T08967
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04512
ECM-receptor interaction
tpai04514
Cell adhesion molecules
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128083535 (SDC1)
04514 Cell adhesion molecules
128083535 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128083535 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128083535 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
tpai04090
]
128083535 (SDC1)
00535 Proteoglycans [BR:
tpai00535
]
128083535 (SDC1)
Membrane trafficking [BR:
tpai04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
128083535 (SDC1)
CD molecules [BR:
tpai04090
]
Proteins
128083535 (SDC1)
Proteoglycans [BR:
tpai00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
128083535 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
128083535
NCBI-ProteinID:
XP_052544855
LinkDB
All DBs
Position
Unknown
AA seq
308 aa
AA seq
DB search
MLRAVAVLLAALCFHAAVPQTTNLNLPPEDLDSSGDDDDGFSGSGAGPLPDQSLTWRTAT
DPTNSSLLATPGVFNEKLFPGIESRTEKKVTTPPATSRVVTEEPVVAVKDETPLLGSPDE
KPTDNTVVTTARSPTTRFPSVLHVTPSEASGTVRELKPKTPGSEMPGTKDVPETNSTTHP
EGDIAAAPTTAPGDLAPTHEEVSEVGSGDPGDFILIKDEDLFPTQDSEVPADSGRNAKAA
GASGIMDRKEVLGGVIAGGLVGLVFAVFLVAFMLYRMKKKDEGSYSLDEPKQSNGGYQKP
HKQEEFYA
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgcggtggccgtgctgctggcagcgctctgcttccacgctgccgtcccgcaa
actacaaatctgaaccttcctcctgaagatcttgattcttccggtgacgacgatgatgga
ttctcaggttcaggtgcaggtcccctacctgatcagtctctcacttggagaacagcaaca
gatccgactaattcctcattactggcaacaccaggggttttcaatgaaaagctgtttcct
gggattgagagccgaactgaaaagaaagtaacaactccacctgcaactagtcgtgtagtg
acagaggagccagttgtagctgtgaaggatgaaacacccttgttgggctcacctgatgag
aagcccacagacaacacagttgtaacaacagcaagaagtcctactactcgcttcccttcg
gtgcttcatgtaactccttcagaagcctcaggcacagtccgtgagctcaaacctaaaacc
cctggctctgagatgccaggcactaaagatgtgcctgagaccaactctaccacccatccg
gagggggacatcgctgctgctcccacaacagctccaggcgaccttgctcctacacatgag
gaggtttctgaagttggctcaggagacccgggagacttcatcttgattaaagatgaggac
ttgttccctacccaggattctgaagtgccggctgactctgggaggaatgccaaagcagcg
ggagcctcgggaattatggacagaaaagaagttcttggaggtgttattgctggaggactg
gttggcttggtgttcgcagtgtttctagttgcatttatgctgtacagaatgaagaaaaaa
gacgaaggaagctattcactggatgaaccgaaacagtctaacggaggataccaaaaacca
cacaaacaagaagagttctatgcataa
DBGET
integrated database retrieval system