Tympanuchus pallidicinctus (lesser prairie-chicken): 128084041
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Entry
128084041 CDS
T08967
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03440
Homologous recombination
tpai03450
Non-homologous end-joining
tpai04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128084041 (RAD50)
03450 Non-homologous end-joining
128084041 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
128084041 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpai03032
]
128084041 (RAD50)
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128084041 (RAD50)
DNA replication proteins [BR:
tpai03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
128084041 (RAD50)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
128084041 (RAD50)
BRCA1-C complex
128084041 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
128084041 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
ABC_tran
DUF2703
AAA_29
TolA_bind_tri
AAA_24
DUF7310
AAA_13
Motif
Other DBs
NCBI-GeneID:
128084041
NCBI-ProteinID:
XP_052545763
LinkDB
All DBs
Position
Unknown
AA seq
1313 aa
AA seq
DB search
MAKIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGNSFVHDPKVANETDVRAQIRLQFRDVNGELVAVQRSMVCTQKSKKTEFKTLEGVITR
TSRHGEKVSLSSKCAEIDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEI
FSATRYIKALETLRQVRLKQGMKVKECQTELKYLKQNKEKAQEIQDNLAKTEAQLSASKE
NIKSIESQLDPLKSSLAAVEKNLMKVMSLDNDVKALESRRRQMEKDNQDLQQKMEKVFQG
TDEQLRDRYRNHQRTVKEKEKRLSDCKRELDRASKECQRFNNEKSELLIERGRLQLQADR
HQEHIKVRDSLIQSLSAQLELDGFEQAPFNDRQIAVFHELLKEREKSDTEAANQLMREFT
QKEAMKQKQIDEIRDRKTGLERTIDLKSDIQNKRQAELKNVKYELRQLEGSSDRIVELDQ
EIIKTEHELEKAERNSNVETLEQEVQTLQNEKINLDKVLRRLDQEMEQLNLHTTTITQME
MLKKDKADKEEQIRKVKSRHSEELTLLLGYFPNKKQLEDWLHGKSTEINETRNRHALLNK
QLASAEQQKNYISAELRKKEEQLSSYEAKLFDVCGSQDFDSNLNKLQDEIERSSKQRAVL
AGATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESEL
KKREKKRDEMMGLKPIRQTVVELQERDIPDLRNRLQTVNRDFARLKGEIEEQETLLQTVL
SEKEGANACLQDITLMERYQTDIRDVERKIAQQEAKLLGVDLNRTVLQVSQEKQEKKHLW
DTVTSKIELNQKMKQDQQNQIQELKSTVNELRAEKLQISSSLQRRQQLEEQAVELTTEFQ
SLCREIKEAKEQVFPLDATLEKLQQDKEDLINKRTASNREIQEKMNGIKEKVKDINKYMK
EIESYIQQGKEKYKKQKECELDEVNSQLAACEKQKEKISKEMEVIRQDIDTQKIQERWLE
DNLTLRQRNEELKKVEDDIKQLVKEMGEMKVPQLKNEQKHLEEKIEGLKRNHHVALGRQR
GFEEEIVRFKKELRESQFKDAEEKHREMMIVMRTTELVNKDLDIYYKALDKAIMTFHSMK
MQEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRSYNYRVVMIKGDTALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIMKCSVSSLGSYVH
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagattgagaaaatgagcatcctgggagtgaggagtttcggtgtggaggacaaa
gataaacagattatcaccttctttaatcccctgactattctggtgggacccaacggcgca
gggaaaacgaccatcatcgagtgccttaaatacatctccactggagatttccctcctggt
accaaaggaaattcatttgttcatgacccgaaggttgccaacgaaacagatgtgagagct
cagattcgattgcagtttcgagatgtgaatggcgagctcgtagctgtccaacgatccatg
gtttgtacccagaaaagcaagaaaacagaatttaaaacacttgaaggggtcattaccaga
acaagtaggcatggtgagaaggtcagcctcagttccaagtgtgcagaaattgatcgggag
atgatcagtgccctcggcgtttccaagtccgtgctgaacaacgtcattttctgccaccaa
gaggaatccaactggccattaagcgaagggaaggccctgaaacaaaagtttgatgagatc
ttctcagcaacaaggtatattaaagcactggaaactctccgtcaagtacggctgaaacaa
ggcatgaaagtaaaggagtgtcagacagaactgaaatacctaaaacagaataaagaaaaa
gcccaggaaatccaggacaatcttgccaagacagaagctcagctgtctgcttctaaggag
aatataaaatctattgagagtcagctcgaccctttaaagagttctctggcagcagttgag
aagaatctcatgaaagtaatgtcactggacaacgatgtgaaagccctggagagcaggagg
aggcagatggaaaaggataatcaagatctgcaacagaaaatggaaaaggtttttcaagga
acagatgaacagctcagggacagatacaggaaccaccagagaacagtgaaggaaaaggag
aagaggttatcagactgcaagcgagaattagatagagcctctaaagaatgccagaggttt
aacaatgagaagtcagagctgcttattgaacgaggtcgtctacagctgcaagcagatcgt
caccaggaacacatcaaagtgagggattccctaattcagtccttgtcagcacagctggaa
ttagatggctttgagcaagcaccttttaatgacaggcagattgctgtttttcatgagttg
ttgaaagagagggagaagagtgatacagaagctgcaaatcagttaatgagggagttcaca
cagaaagaagcaatgaaacaaaaacagatcgatgaaatcagagataggaagactggatta
gagagaaccatcgacctgaaatcagacattcaaaataagaggcaggctgaactgaagaat
gtaaagtatgagctgcgtcagttggagggctcttcagacagaatagtggagttggatcag
gagatcataaagacggagcatgagctggagaaagctgagaggaacagcaatgtagaaact
ctggaacaggaagtgcaaactctgcagaatgagaaaatcaacctggacaaagttcttcgg
aggttggaccaggagatggagcagctgaatctgcataccacaactattacccaaatggag
atgctgaagaaagacaaagcagacaaagaggagcagattagaaaagtaaaatcgaggcat
tccgaagagctgacactactgctgggatattttccaaacaaaaaacaacttgaagactgg
cttcatggcaaaagcactgagattaacgagacaaggaatagacatgccctgctaaacaaa
caactggcatcagcagagcaacagaaaaattacatcagtgctgaactaagaaagaaagaa
gaacagttgtccagctatgaagcaaagctttttgatgtttgtggaagccaagattttgac
agtaacctgaacaaactgcaagatgagattgaaagaagttcaaagcaacgagctgtgctt
gctggagccactgcagtttattcacagttcattacacagctgacagaggagaaccagtcg
tgttgtccagtttgccaaagagtttttcaaacggaggctgagctgcaagatgtgatcagt
gacctgcagtcaaagctgcgtctcgccccggacaaactgaagtcaacagagtctgagctt
aaaaaaagagagaaaaaacgtgatgagatgatgggtcttaaaccaattaggcaaactgta
gtggagctccaagaaagggacataccagacttgaggaacaggctgcagaccgtgaacagg
gattttgcacgcctgaagggtgagatagaagaacaggaaacacttttgcagacagttctg
tctgaaaaggaaggtgctaatgcatgtttacaggacataactctcatggaaaggtaccag
actgatatcagggacgttgaaagaaaaattgctcagcaggaggctaagctgctaggggtc
gatttaaatagaactgttctgcaagtaagccaagagaaacaagagaaaaaacacttgtgg
gatacagttactagcaaaattgagttaaatcagaaaatgaaacaagaccagcaaaatcaa
attcaggagctgaagagtacagtgaatgaactcagagcagagaaactgcagatttccagc
agcttgcagcgtcgtcagcaactggaggaacaagcagtggaattaaccactgaatttcag
tccttatgcagagagatcaaggaagcaaaggaacaggtatttcctctggatgcaacttta
gaaaaactgcagcaagacaaggaggatctaattaataaaaggactgcaagtaatagagaa
attcaagagaagatgaacggcataaaagagaaagttaaagatataaataagtacatgaaa
gaaattgaaagctatattcaacaaggaaaggaaaaatataagaagcaaaaggagtgtgaa
ctcgatgaagtaaactctcagttagctgcctgtgagaaacagaaggaaaagattagtaaa
gagatggaagttattcggcaggatattgacactcaaaaaatccaggagagatggctggag
gataatcttactttgaggcagcggaatgaagagctaaaaaaagttgaagacgatataaaa
caactggtcaaggagatgggagaaatgaaagtcccacagctgaaaaacgagcagaaacat
ttggaggagaaaatagaaggtctgaaaagaaaccatcacgttgcactgggccggcagcgt
ggatttgaggaagagattgttcggttcaaaaaggagcttcgagaatcacagttcaaggat
gcagaggaaaagcacagggagatgatgattgttatgagaacaacagagctggtgaacaaa
gatttggacatttattacaaggccctcgataaagcaataatgacgtttcatagcatgaag
atgcaagaaatcaacaagataatccgtgacctttggcgaagtacctacagaggacaagat
attgaatatatagaaatccgttctgatgcagatgagaacgtttcagcatctgataaaaga
aggagttacaattacagagtagtgatgataaagggagatacggcgctggacatgcgagga
aggtgcagtgctgggcaaaaggtacttgcttctcttatcatccgtctcgctctggcagaa
acattctgcctcaactgtggcatattggcactggatgaacctactaccaatcttgatcga
gaaaatatagaatctcttgcacatgccctcgtggagataataaaaagccgctcacgacaa
cggaactttcagctcctggtgataacccacgatgaagattttgtggaactcctcggccgt
tccgaatatgtggaaaccttctacaggatcaagaagaacattgatcagtgctccgagatc
atgaagtgcagcgtcagctcccttggctcatatgttcattaa
DBGET
integrated database retrieval system
