Tympanuchus pallidicinctus (lesser prairie-chicken): 128084096
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Entry
128084096 CDS
T08967
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128084096 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpai03041
]
128084096 (DDX46)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128084096 (DDX46)
Spliceosome [BR:
tpai03041
]
Complex A
U2 snRNP components
U2 related factors
128084096 (DDX46)
Complex B
128084096 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
128084096
NCBI-ProteinID:
XP_052545868
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRKREDRRSRSRDRDRRRERSRSRDKRRSRS
RDRKRQRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSPSPSKNRKTENRSRSKER
TEGVEVSKEKKKEKDDKEEEKDKDTSASTVATENFDQNKLEEEMRKRKERVEKWREEQRK
KAMENIGELKKEIEEMKQGKKWSLEDDDDDDEETAEGEKEGNEVEDEELDPLDAYMEEVK
EEVKKFNMRSVKGGGGSEKKSGPTVTKVVTVVTTKKAVVETEKKKGELMENDQDAMEYSS
EEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLE
MEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIA
KTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRV
VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFD
MGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQH
VIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY
DRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNK
GFAYTFITEDQARYAGDIIKALELSGNPIPADLEKLWADFKEQQKAEGKLIKKSSGFSGK
GFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMGTPGSS
NAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVFVPFHFKDVMQQATNAILRGGTIQA
PTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFPQTARWK
VTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRL
IKEELIRLQNSYQPTNKGRYKVL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtccaggcattatcggaagcgctctgcctcgaggggccgctctgggagc
cgctccagaagtcgttctccatctgacaaaaggaaacgggaggacaggcgctccaggagc
agagatcgggatcgcagacgggagcggtcgcgcagcagggacaagaggagatcccgttca
cgtgacaggaagcgccagagacgttcgaggagtagagaaagggaacggagtcgggagaga
agaagatcgcggagccgagagagaaggcgctccaggagcagaagtagaggcagacggtct
cgatcccccagtccgagcaagaacaggaagacagaaaacagatcaagatctaaagaaagg
acagaaggtgtggaagtttctaaagaaaagaaaaaagagaaagatgacaaggaagaagag
aaagataaagataccagtgcatctactgtggccactgagaactttgatcagaacaaacta
gaagaagaaatgagaaaacgaaaagaaagagtggagaagtggagggaagagcaacgcaag
aaggcgatggagaacattggggaactgaaaaaagaaatcgaggagatgaaacagggaaaa
aaatggagcttggaagatgatgacgatgacgatgaggaaactgcagaaggagaaaaggaa
ggcaatgaggttgaagatgaagagttagatcctttggatgcttatatggaagaagtaaaa
gaagaggtcaagaagttcaatatgagaagtgtgaagggtggaggtgggagtgaaaagaaa
tctggaccaactgttaccaaagtagtaactgtggtgacaaccaaaaaggcagttgtagag
acagagaagaagaaaggggaactcatggagaatgaccaagatgcaatggagtattcttca
gaagaagaggaagttgatcttcagactgccctaactggctatcagaccaagcagagaaag
ctgctagaaccagtggatcatggaaaaatagaatatgagcccttcaggaaaaacttctat
gttgaagtacctgaactagctaaaatgacacaagaagaggtgaatgtgtaccgactggag
atggagggaataacagtcaagggaaaaggctgccccaaaccaataaaaacctgggtacag
tgtggaatttccatgaagattcttactgctctcaaaaaacacggctatgagaaacccaca
cccattcagagccaagctatcccagcaattatgaatggtcgcgacttgattggcattgct
aaaacaggaagtggaaaaaccattgcatttctgttgcccatgttcagacatattatggat
cagagagctttagaagaaggagaaggtcccatagctgtcattatgacacctactcgtgag
ctggccttgcagattaccaaggagtgtaagaagttctcaaagacccttggacttcgagtt
gtttgtgtgtatggaggaacagggattagtgaacagatagctgaactcaaaagaggtgct
gaaattattgtttgcacacctggacgtatgattgacatgttagcagccaacaatggtcgg
gtgaccaatctccgcagagtcacctacgttgtccttgatgaagcagacagaatgtttgac
atgggttttgagcctcaggtcatgcgcattgtagacaacgtcaggcctgaccgtcagact
gtcatgttctctgctacttttcccagagctatggaggcgttggctcggagaatcctaagt
aaacccatagaagtgcaggttggaggcagaagtgttgtctgttctgatgtggagcagcac
gttattgtgattgaagaggagaataagttcttaaagctactagagctactgggacattat
caggagaaaggatcagttatcatatttgtggacaaacaagaacacgctgatgggttgttg
aaagatttaatgagagcttcttatccctgcttgtctcttcatggaggcatcgatcagtac
gacagggacagcataatcaatgatttcaagaatggaacgtgcaaacttctggtggccaca
tctgtagcagcaaggggtttggatgtaaaacagttgatgctggtggtcaactatagttgt
cccaaccattatgaagattatgtgcaccgagcaggccggactggacgagctggtaataaa
ggatttgcatatacgttcattactgaggatcaggcacggtatgctggtgatatcatcaag
gctttggaattatctgggaatccaattcctgctgatttagagaagctctgggctgacttc
aaagaacaacagaaggctgagggaaagctgattaaaaagagcagtgggttctctggcaaa
ggctttaagttcgatgaaacagaacaggccttggctaatgagagaaagaagctacagaaa
gcagctcttggcttgcaagattcagatgatgaagatacagctgttgatattgatgaacaa
attgaaagcatgttcaattcaaagaaaagagtaaaagacatgggaacaccaggatcatcc
aacgctcctacgccatccgctggtaatgcagaaaaactggagattgctaaaagattggct
ttgagaatcaatgcccagaagaatctcggagcagaggcacaagtatttgtccccttccat
tttaaggacgtgatgcagcaggctacaaatgctatccttagaggaggcacaattcaagct
cctacagtatctgctaagaccattgcagagcaattggctgaaaaaatcaatgctaagctg
aattatgtacctatagagaagcaggaggaagagaaacaggatggtggacagaatgaatct
tttaagagatatgaagaagaattagagatcaatgacttcccacagactgccagatggaaa
gtcacctccaaagaagcgctacagagaatcagtgaatattctgaagctgctattacaatc
agaggaacttatttccctccaggcaaggaacccaaggaaggagagcgaaagatttatttg
gctatagagagtgccaatgaactggctgtacagaaagcaaaggcagaaatcacacgactt
ataaaagaggagcttattagattgcaaaattcataccaaccaaccaacaaaggaagatac
aaagttctatga
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