Tympanuchus pallidicinctus (lesser prairie-chicken): 128084227
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Entry
128084227 CDS
T08967
Symbol
SMARCA5
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128084227 (SMARCA5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpai03021
]
128084227 (SMARCA5)
03036 Chromosome and associated proteins [BR:
tpai03036
]
128084227 (SMARCA5)
Transcription machinery [BR:
tpai03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
128084227 (SMARCA5)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
128084227 (SMARCA5)
RSF complex
128084227 (SMARCA5)
WICH complex
128084227 (SMARCA5)
B-WICH complex
128084227 (SMARCA5)
NORC complex
128084227 (SMARCA5)
BRF complex
128084227 (SMARCA5)
NuRF complex (fruit fly)
128084227 (SMARCA5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
Motif
Other DBs
NCBI-GeneID:
128084227
NCBI-ProteinID:
XP_052546074
LinkDB
All DBs
Position
Unknown
AA seq
1207 aa
AA seq
DB search
MCASAELPAGFACAPVTPPRWSRLLPPPPHRARPSARGXSVTGPHSLSRARGSPAPVRLL
RGRAREGGRERSGANGRPRRRKRRRARDALAPAAPHVEAGLSRERVAGSVPGWWDPAEKA
GAAAGRASAAGRAPGSDRSGPTPPPGRPPRARSQPGAGPARVPPERRLRRGIMSAGQQGP
PPPDEPPAPPGAGGGEAAGTAPAGPTGADAAMEESFNDASPGKPKEIQEADPTYEEKMQT
DRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRT
EQEEDEELLTESSKTTNVCTRFEESPSYVKWGKLRDYQVRGLNWLISLYENGINGILADE
MGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQ
RAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE
FKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVERLHM
VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRL
LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS
QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGI
NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR
LDSIVIQQGKLVDQNLNKLGKDEMLQMIRHGATHVFASKESEITDEDIDHILERGAKKTA
EMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKMAFTEWIEPPKRERKANYAVDA
YFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDL
PNAAQAQKEEQLKIDEAEPLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIE
NIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTKIG
RYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFD
WFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSSAQKRKMDGTPDGRG
RKKKLKL
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgcctcggctgagctaccagccggctttgcctgcgcgcccgtgacgccgccgcgc
tggtcccgcctccttcccccgcccccccaccgcgcgcggccctcggcacgcggcngctcc
gttaccggcccgcacagcctttcgcgcgcgcgaggcagccccgcccccgtccggctgttg
cgtggccgcgctcgcgaaggcgggcgcgagaggagcggggccaacggccgcccaaggagg
aggaagaggaggagggctcgcgacgcgctcgctcccgccgcgccgcacgttgaggccggg
ctctcgcgagagcgggttgccggctcggttcctggttggtgggatcccgccgagaaagcc
ggggcggcagcgggacgggcctccgccgccggtcgcgcaccgggctccgatcgcagcggc
ccgaccccgccgccgggccgcccgccgcgggcgcgcagccagccgggcgctggcccggcc
cgcgtcccgcccgagcgccgtctgcggagagggatcatgtccgccgggcagcagggaccg
ccgccgccggacgagccgcccgcgccgccgggagccggcggcggagaggcggcggggacg
gctcccgccgggcccactggagccgacgccgcgatggaggaatcttttaatgatgcatca
ccaggaaaaccaaaagaaatccaggaagcagatcctacatatgaagagaaaatgcaaaca
gacagagcaaacagatttgagtatctgttgaagcagactgagctgtttgctcacttcatt
cagcctgctgctcagaaaactccaacttcacctttgaaaatgaaaccaggacgtccacga
ataaagaaggatgagaagcagaacttgctgtcagttggcgactatcgccatcgtagaaca
gaacaggaagaagatgaggagctgttaacagaaagctctaagacaaccaatgtctgcact
cggttcgaagaatctccatcatatgttaagtggggaaagctgcgtgattatcaggtccga
ggattgaactggctcatttctttatatgaaaatggcatcaatggtatcctagcggatgaa
atgggtcttgggaagacactgcagacaatctctctccttggatatatgaaacactacaga
aatattcctggtcctcacatggtgttagttcccaagtccaccctacataactggatgaat
gaattcaagagatgggtacctacgcttcgagcagtgtgcttgataggtgacaaagaccag
cgagctgcctttgtcagagatgtgttgttgccaggagagtgggatgtctgcgtcacgtcg
tatgaaatgcttatcaaagaaaaatcagtattcaagaagtttaactggagatatttagtc
atagatgaagcccacaggattaaaaacgaaaaatcaaagttatcagaaatagtgagagaa
ttcaagaccacaaatcggctgctgctaactggaactccactgcagaacaacctacatgaa
ctctgggcgcttcttaacttccttttgccagacgtcttcaattcgtccgaagactttgac
tcatggtttgatacgaacaactgtctaggggatcaaaagttggtggagcgtctccatatg
gtcttacgaccattccttttacgtcgcattaaggctgatgttgagaaaagtttacctcca
aagaaggaagtgaaaatttacgtgggtctcagcaaaatgcaacgagaatggtatacaaga
atcttaatgaaggatatagatattttgaattctgctggaaagctggacaaaatgagactg
ttgaatatcctaatgcaactgcgaaaatgttgcaatcatccctatctctttgacggagca
gaacctggtccaccttacacaacagatatgcatttggtcaccaacagtggcaagatggta
gtactggacaaattactaccaaagctgaaagagcaaggttcacgagtcttaatcttcagc
cagatgaccagagtcctggatatcttggaagattattgtatgtggcgaaattatgagtac
tgtagactggacggacaaacacctcatgacgaaagacaggcttctattaatgcatataat
gaacctggtagctcgaaatttgtcttcatgttgagtacacgggctggaggtcttggaatc
aatttggctaccgctgatgttgtaattctgtacgattcagactggaatccgcaagtagat
cttcaggctatggatcgagctcacagaattggtcaaacaaagactgtaagagtgttcaga
tttatcacagacaatacagtggaagaaaggatagtggagcgtgcagaaatgaaactccgc
ctcgattccatagtcattcagcaaggcaaactggtggatcaaaatttgaataaactcggg
aaggacgaaatgctgcaaatgattcgacacggagcgacgcatgtgttcgcctccaaggag
agtgagattacagatgaagatatagatcacattttggaaagaggtgcaaaaaagactgca
gaaatgaacgaaaaactttccaagatgggtgaaagctcgctcagaaatttcacgatggat
acagaatccagcgtatataattttgaaggggaggactacagagaaaaacagaagatggca
tttacagagtggattgaaccacctaaacgagaaagaaaagccaattacgccgtggacgct
tacttcagagaggctcttcgagtcagtgagccaaaagcacccaaggcaccacggcctcca
aaacagccaaatgtacaggactttcaattctttcctccgcgactctttgaactactggaa
aaagagattctctactacaggaaaacaatcgggtacaaggtacctcgtaatcccgatctt
ccgaatgcagcccaagcgcaaaaggaagagcagcttaagattgatgaagctgaacctctt
aatgacgaagaactagaagaaaaagagaagcttctcacccagggatttactaactggaat
aagagagattttaaccagttcatcaaagctaatgagaagtggggccgtgacgatattgaa
aatatagcacgagaagtagaaggaaaaaccccggaggaagtcattgagtattcagctgtg
ttctgggaaaggtgcaacgaacttcaagacatagagaagatcatggctcagatagaaaga
ggagaagccagaattcagagacggatcagcataaaaaaagcacttgatacgaagattggc
agatacaaagcccctttccaccagctgagaatatcgtatggtactaacaaagggaagaat
tacactgaagaggaggaccgctttttaatctgcatgcttcacaagctaggctttgataaa
gagaacgtctacgatgaattaagacagtgtatccgaaactccccccagttcagatttgac
tggtttctcaagtctagaactgccatggagctacagaggagatgcaatactttaatcacc
ctgattgaaagagagaacatggaactggaagaaaaggaaaaggcagagaagaagaaacgc
ggaccaaaaccatcttcggcacagaagcgcaaaatggatggtactcctgacggtcgtgga
agaaaaaagaagctaaagctgtga
DBGET
integrated database retrieval system
