Tympanuchus pallidicinctus (lesser prairie-chicken): 128084418
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Entry
128084418 CDS
T08967
Symbol
LRBA
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128084418 (LRBA)
Membrane trafficking [BR:
tpai04131
]
Endosome - Lysosome transport
Others
Others
128084418 (LRBA)
Endosome - Golgi transport
128084418 (LRBA)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
128084418 (LRBA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Laminin_G_3
Neurobeachin
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR75_1st
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
SUKH_6
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
128084418
NCBI-ProteinID:
XP_052546389
LinkDB
All DBs
Position
Unknown
AA seq
2845 aa
AA seq
DB search
MASDGRQVVRPTGDGGGGVGKEGNAAEGGSVLQPLNPGVPIRGIRMKFAVLGGLVEVGEV
SNRDIVETVFNLLVGGQFDLEMNFIIQEGEGITCMVELLDKCDISCQAEVWSMFTAILKK
SIRNLQACTEVGLVEQVLKRIDRADNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGEK
GRWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMD
PVNNINVDKDKPYLYCFRTNKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKWY
MVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTNDTFDKCFLGSSETADANRVFCGQ
MTSVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLDEHHRLLLYDGKLSSAIAFM
YNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSVQSALHSIGGVQVLFPLF
AQLDYRQYSSDHIDTTVCSTLLAFIMELLKNSIAMQDQMLSCKGFLVIGYSLEKSSKAHV
TRAVLELCLAFSKYLSNLHNGAPLLKQLCDHILLNPAIWIHIPAQIQLILYTYLSTEFIG
TVNIYGAIRRVGTVLLVMHTLKYYYWVVNPQDRSGITPKGIDGPRPTQKETLSLRAFLLM
FIKQLVMKDYGVKEEELQAILNYLLTIHEDDNLMDVLQLLVALMSEHPSSMIPAFDQRNG
LQVIYKLLASKSEGIRVQALKVMGYFLKHLPPKRKAEIMLGHGLFSLLAERLMLHTNLIT
MTTYNVLFEILTEQICTQVIHKQHPDPDSTVKIQNPQILKVIAILLRNSPQSPETLEIRR
AFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCCFNPKTSEEQKITEMVYTVFRILLYH
AIKYEWGGWRVWVDTLSITHSKVTFEMHKESLSQMYREYQEKEGEESVTCPSASIRTISG
VGQGAEIVGKKQCLELKEAATPPPFRDDMESGTEKNESEGEEQTPSVSKQRNDFKDEDRE
TMQDLKAVPCSELSPEPEAIKPSVSEISSGIAEAIEDSLSRVHELVEETAATAASLVMEI
YSEGESPGMERSAVEVEDDDDFVDLKEESGMPLPSEEFAETDRKDSSNENGEAKQEKAIQ
QELESVLLKSEDTGGVDGQNKELALSETVSSAAEVVTQPNSEGEKKLEEEKVLYSETRIA
EDTNAHVPEHAGCSEKRIARLDVSSVASDTERLELKAHTRLEAPLPPRSLPEMSRQQDSS
GQELAPTSDGQRRDSRSTVFRIPEFKWSLMHQRLLTDLLFSIETDIQMWRSHSTKTVMDF
VNSSDNVVFVHNTIHLISQVVDNMIMACGGILPLLSAATSATHELENIEATQGLSVEASL
TFLQRLINLVDVLIFASSLGFTEIESEKNMSSGGILRQCLRLVCAIAVRNCLECQQHAQL
KPIGDLTKNQKTVQGFIGTGKSAAKSPVDIVTGGISPIRDLDRLLQDMDINRLRAVVFRD
IEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERRPPTHSQSFKESGNENNGTSAADV
EHPSAALGALTSASAEDSECTASVQRRDSGLGEEPASEQTNSSGGVAEAEALSVSAGPDA
VSEVLCTLSLEVNKSQEDRGETGPEDSKPSASVPAAKNVNVKDILRSLVSTPADGTAVDP
ALLPPAFLGVLGDGAAEQPVQFHSFDRSVVVPPKKSNISATTAPVGIPANAVSVVSLDST
QASDLSAESPGRRSSNSKLPSVPTVSSVPEDSASNMSITDRLEHALEKAAPLLREIFVDF
APFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELV
NEGRLLSQTMKDHLVRVANEAEFILSRQRAEDINRHAEFESLCAQYSADKREEEKMCHHL
ITAAKYRDQVTATQLIQKIVNILTDKHGAWGSSAPSRPREFWRLDYWEDDLRRRRRFVRN
PLGSTHPEATLKAAGEHAPDEDILVKGKQSIKSQALGNQNSESEILLEGDDDITSFIEER
EVENLTGPVALSAPAQLVAPSVVVKGTLSITLSELYFEVDEEDPSFKKIDPKILAYTEGL
HGKWLFSEIRAIFSRRYLLQNTALEIFMANRVGVMFNFPDQATVKKVVNCLPRVGIGATF
GLPQTRRISLASPRQIFKASHMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPIFPWV
LTNYESDELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTAS
FALAWLLRIEPFTTLFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPE
IFVNSNNYNLGVMDDGTVVSDVELPPWAKTPEEFVRINRLALESEFVSCQLHQWIDLIFG
YKQQGPEAARSLNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR
SSAMQVYLLLQSPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLTNPAVITVTANRL
FAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVIT
SDNRYILVCGFWDKSFRVYSTDSGKLMQVVFGHWDVVTCLARSESYIGGNCYILSGSRDA
TLLLWYWNGKTNIVGDNPRGDFATPRAILTGHDYEITCATICAELGLVISGSKEGPCLIH
SMNGDLLRTLEGPETLEGPENCLRPKLIQASREGQCVIYYENGLFCVFSVNGRLQATMKT
DDKIKAIQLSRDGQYLLTGGDNGVVMIWQMWDLKKLFAYPGCDAGIRSMALSYDQRCILT
GMASGSIVVFYNDFNRWHHEYQTRY
NT seq
8538 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgacggcagacaagttgtgcggccaacaggtgatggcggaggaggagtgggg
aaagaaggaaacgccgccgaagggggaagcgtactgcagcctctgaatccaggggtccct
atccgaggcatcaggatgaagtttgccgtgctgggagggctggtggaggttggtgaggtg
tcgaacagagacatcgtggaaacggtattcaatctgcttgttggaggccaatttgacttg
gaaatgaactttatcatccaagaaggagagggcattacttgcatggtagaattgctggat
aaatgtgacatctcctgtcaggctgaggtgtggagcatgtttacagctatcttgaaaaaa
agtatacgcaatctacaagcgtgcacagaagtgggactggttgaacaagtgctcaagagg
attgatagagctgacaacatgattgcagatctcttagtggatatgctgggcgtgttggct
agctacaacttgaccgttcgagagctaaagttattcttcagcaagcttcaaggagaaaaa
gggagatggccaccacacgctgggaaattgttgtctgtgttaaaacacatgcctcagaag
tatggacctgatgccttcttcaactttccggggaaaagtgctgcggccattgccttacct
cctatagccaagtggccctatcagaatggatttacttttcacacttggttaagaatggat
cctgtaaacaatatcaatgtggataaggataagccatatttatattgttttcgaacgaac
aaaggacttggctattctgctcactttgttggtggctgcttgattgtaacgtccataaaa
tcaaagggaaaaggttttcagcattgtgtaaaatttgatttcaagccacagaagtggtat
atggttactattgtgcacatctataatcgctggaagaatagtgaacttcgatgctatgtg
aatggggaactggcatcttatggagaaataacgtggttcgtcaacaccaatgatactttt
gacaaatgtttcctgggttcctcagaaacagcagatgccaatcgagtgttttgtgggcaa
atgacatccgtttacctttttagtgaggctctcaatgctgctcaaatctttgccatttat
cagcttggtctgggatacaagggaacattcaagttcaaggcagaaagtgatctcttcctc
gatgagcatcacagattgttgctgtatgatggcaagctatccagtgctattgcttttatg
tacaatccaagggctacagatgcacagctctgtctagagtcatcccctaaagataaccct
tctatttttgttcattcaccacatgccctcatgctgcaggatgtgaaagcagtcttgaca
cattctgtccagagtgccttgcattccattggaggagtgcaggtactttttcctctcttt
gcacagctagactataggcaatattcatcggaccacattgacacaactgtttgttcaact
ctgttggcttttattatggagttgttgaagaactcgattgctatgcaagatcaaatgctt
tcctgtaagggcttccttgtgataggatatagcttggaaaagtcttccaaagctcatgtt
acccgagctgtactagagctatgccttgctttttctaagtacctgagcaacttgcacaat
ggagcacccttgctgaaacagctatgtgatcatattctccttaatcctgcaatatggatt
catatcccagcacagattcagctgatcctgtacacttacttgtctactgagttcattggc
actgttaacatatatggtgcaattagacgggttgggacagttcttttggtcatgcatacc
ctgaagtattattactgggtagtgaatcctcaagatcgcagcggtataactcccaaaggc
atagatgggcctcggcctactcaaaaagagactttatctctgcgtgcgtttttgttgatg
ttcattaaacagctagtgatgaaggactatggagtaaaagaagaagaattgcaggcaatc
ctcaattatctgctcactattcatgaggatgacaatctaatggatgtcctgcagttgctt
gttgctctcatgtcagagcacccaagttcgatgatccctgcttttgatcagaggaatgga
ttacaggtcatctacaaacttttagcatcaaaaagcgaaggcatcagggtgcaagctctg
aaagtgatgggatatttcttaaagcatcttcctccaaagagaaaagctgagatcatgctt
ggacatggattgttttctttgctggctgaaaggctgatgcttcatacaaacctgatcacc
atgaccacatacaatgtcttatttgagattctgactgaacagatttgtacccaggtgata
cataaacaacatcctgacccagattcaacggtgaagatacaaaatcctcagattttgaag
gttattgccatcctgctacgtaattctccccagagtccagaaacattggagattcggcga
gcctttctctcagatatgattaaactttttaataacagcagagaaaatagaaggagtttg
ttacaatgctccgtttggcaggagtggatgctttctctttgctgttttaatcccaagact
tcggaggagcagaagataactgagatggtgtatactgtttttcgaattttgctttaccat
gctatcaagtatgagtggggtggctggcgtgtttgggtggatacactgtctatcacacat
tcaaaggtaacctttgaaatgcacaaagaaagtctttctcaaatgtacagggaataccaa
gagaaggaaggtgaagagagtgtaacatgtccttcagcttcaattagaacaatttctgga
gttggccaaggagctgaaattgtgggaaagaagcaatgtttggaattaaaagaagctgct
actcctcctcccttccgtgatgatatggagtccggtactgaaaaaaatgagtcagaaggt
gaggagcaaactccttcagtctctaagcaaaggaacgacttcaaggatgaggacagggaa
actatgcaggatctaaaagcagtgccttgttcagagctttctccagagcctgaagcaata
aaacccagtgtttctgaaattagtagtggaatagctgaagcaattgaagattctctgagc
agagttcatgagcttgtggaggaaacagctgctactgcagcttctttggtaatggaaatt
tattcggaaggagaaagtccaggaatggaaagatcagcagtggaagtagaagacgatgat
gactttgttgatttgaaagaggagagtggtatgcctttaccttcagaagagtttgcagaa
acagacagaaaggatagctctaatgaaaatggagaggcaaagcaggaaaaggcaatacaa
caggaacttgaatctgtgcttttaaaatctgaagatactggaggcgtggatgggcaaaac
aaagagctggctttatcagaaacagtcagttctgcagctgaagtagtgactcaaccgaat
tcagaaggggagaagaagctggaggaagaaaaggtgctttatagtgaaacgagaatagct
gaagataccaatgcacatgtaccagagcatgcaggatgctctgaaaaaagaattgccagg
cttgatgtttctagtgttgcatctgatacagaaagactggaactgaaagcccatacgcgt
ctcgaagcacctctaccccccagatctctacctgagatgtcaaggcagcaagattcttca
ggacaagagctagctcctacatcagatgggcagagaagagactctagatcaactgtgttc
cgtattcctgagtttaagtggtctctgatgcatcagcgcttgcttacagacttgctcttt
tcaattgaaacagatatacagatgtggagaagtcattctacaaaaactgtgatggacttt
gtgaatagcagtgacaacgtcgtatttgtgcacaataccattcacctcatctctcaagtg
gtggacaacatgatcatggcttgtggtggcatattgccactgctttctgctgccacatct
gctactcatgaattggagaacattgaggcaactcaaggactttcggtagaagcttcttta
acatttctccagagattaattaaccttgtagacgtgttaattttcgcaagctctcttggt
ttcactgaaattgagtctgagaaaaatatgtcatctggaggaattctacgacaatgtctt
cgactggtgtgtgccatagcagtaagaaattgcttggagtgtcagcaacatgcacagttg
aagccaattggagacctcacaaagaaccaaaaaacagtgcaggggtttataggaacagga
aagtctgcagcgaagagtccagtggacattgtgactggtggaatttctccaatacgagac
cttgacagacttctgcaggacatggatattaatagacttcgagcagtagttttcagagat
atagaggatagtaaacaggctcagttcttggctttggcagttgtatattttatttctgta
ctcatggtttcaaaatacagagatattctggaaccccagaatgaaagaagaccaccaacc
cacagtcagtcattcaaggaatcagggaatgaaaataatggaacttctgctgcagatgtg
gaacatccatctgctgctcttggtgctttaacttcagcttctgctgaagattcagagtgt
acagcatctgtacaaagaagggactccggtcttggggaggaaccagcttcagagcaaaca
aacagttcgggcggtgttgctgaggcagaagctctgagtgtcagtgcaggtccagatgct
gtcagtgaagtactttgcaccctgtccttagaagtaaataagtctcaggaggacagaggt
gagactggaccagaggacagtaagccttcagcttctgtgccagctgcaaaaaatgttaat
gtaaaggacattctgagaagcttagtaagcacaccagctgatgggactgcagttgatcct
gctcttctgccacctgcctttcttggagttcttggtgatggagctgctgagcagcccgta
cagttccattcttttgacaggagtgttgtagtaccacccaagaaatcaaacatttccgct
actacagctcctgtgggtattcctgcaaatgctgtcagtgtggtttctttagattcgaca
caagcttcagatttgtcagctgaatctcctggaaggcgttcatcaaattcaaaactgcca
tctgtccctacggtttcttcagtgcctgaggattctgcttcaaatatgagtattacagac
agacttgaacatgctttggaaaaagctgccccacttctgagagagatttttgtggatttt
gctccgttcctttctcgaactcttttaggcagccatgggcaggagttgctgatagaaggt
acaagcctcgtgtgtatgaaatctagcagttcagttgtggagctggtgatgcttctttgc
tcacaggagtggcagaactctatacaaaagaatgctggtcttgcctttatagagctagtc
aatgaaggaaggttgttgagtcaaactatgaaggaccatttggtcagagtggctaatgaa
gcagaatttatcttgagcagacagagggcagaagatattaaccgacatgctgaatttgag
tcactgtgtgcccagtactctgctgacaaacgggaagaagaaaaaatgtgccatcatttg
ataacagcagctaagtaccgagaccaagtgactgcaactcagctaatacagaaaattgtc
aacattcttacggacaagcatggagcctggggaagctctgcgccaagtcgtcctcgtgag
ttctggcgccttgactactgggaagatgacttgcggcgccgacgacgatttgtgcgtaac
cccctcggatcgacacatcctgaagcgacactaaaagcagccggagaacacgctcccgac
gaagatatacttgttaagggaaagcagtctatcaagagccaagccttaggaaatcagaac
tcagaaagtgagattctcttggaaggcgacgatgatatcacgtcattcattgaggagaga
gaagtggagaacctaacaggtccagttgccctgagtgcgccagctcagctggtggcaccc
tcggtggtcgtgaaaggcactctgtccatcactctttccgagctctacttcgaggtggat
gaagaagatcccagttttaagaaaatcgacccgaagattctggcatatacagaaggactc
catggcaaatggcttttttcagagattcgagctatcttttcccgacgctatcttctacaa
aatacagcgctggagatattcatggcaaatagagtgggtgtcatgttcaactttcctgat
caagcaacagtaaagaaagtggttaactgtctccctcgggttggtattggggctaccttt
ggactacctcagaccagacgcatttctttggctagtccacgacagattttcaaagcttcc
catatgacccagcggtggcaacaccgagaaatttccaacttcgaatacctgatgtttcta
aacacaatagcaggtcgcacttacaatgatttaaatcagtatcctattttcccttgggtt
cttaccaactatgaatcagatgagttggaccttacgcttcctagcaacttcagagatttg
tcaaagcctattggagctttgaacccaaagagagcagcgttctttgctgagagatatgaa
tcatgggaagatgatcaagttccaaagtttcactacggtacacattactcaactgcaagt
tttgcactcgcgtggttattaagaattgaaccctttacaacacttttcctaaatctacaa
ggtgggaagtttgatcatgcagatagaaccttttcatctatttcaagagcgtggcgcaac
agtcagcgtgacacttcagatatcaaggaattgattcctgaattctattacctcccagag
atatttgtcaacagcaacaattacaatctaggagtgatggatgatggaacagttgtgtct
gacgttgaacttccaccgtgggccaaaaccccagaagaatttgttcgcataaacagactg
gcgttagaaagtgagtttgtttcctgccagcttcaccagtggattgatctaattttcggc
tacaagcagcaagggccagaggctgccagatccctgaatgtgttctactatttgacgtat
gaaggagctgttaatttaaattcaataacggatcctgtattgagagaggctgttgaagct
caaatacgaagttttggacagaccccttcccaactgctcatagaaccacatcctccaaga
agttctgcaatgcaggtgtatctcctcctgcagagcccgctgatgttcacagaccaagct
caacaggatgttatcatggttctaaagttcccatccaactcccctgtcactcatgtagca
gccaacacccagcctggtctgaccaatcctgctgtgatcacagttactgccaataggcta
tttgctgtaaataagtggcataaccttcctgctcatcaaggtgctgtacaagaccagcct
taccagctgccagtggaaatcgatcctctcatagccagcaatacaggtatgcacagaagg
caaatcactgaccttttagaccaaagcattcaggtacattcccagtgttttgtgatcacc
tctgacaatcgctatatcttggtttgtggcttctgggacaagagtttccgagtttattct
actgattcaggtaaactgatgcaagtagtatttggacactgggatgttgtcacctgtctt
gctcgttctgagtcgtatattggaggaaattgttacattctgtcagggtctcgtgatgca
acattgctgctctggtactggaatggcaaaaccaatatcgttggtgataatccaagaggt
gattttgcaactcctcgagccattttgacaggacatgactatgagatcacctgtgctacc
atttgtgctgaacttggcttagtaataagtggttcaaaagaaggaccatgtctcatacat
tctatgaatggagatttgctaaggacgttagaaggtcctgaaacattagaaggtcctgaa
aattgcctgagaccaaaacttattcaagcttcaagggaaggccagtgtgtcatatattat
gaaaatggccttttttgtgtattcagtgtgaatgggagacttcaagccactatgaaaaca
gatgacaagatcaaggcaattcagctgagtagagatggacagtatctgcttacgggtgga
gacaatggagttgtcatgatatggcagatgtgggacctgaagaagctttttgcttaccca
ggctgtgacgctggaatccgatccatggccctgtcatatgaccaaaggtgcatactgacc
ggaatggcatcggggagcatagtggttttctacaatgacttcaatcgttggcatcatgaa
tatcaaaccagatactga
DBGET
integrated database retrieval system
