Tympanuchus pallidicinctus (lesser prairie-chicken): 128084861
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Entry
128084861 CDS
T08967
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128084861 (CHD5)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128084861 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
128084861
NCBI-ProteinID:
XP_052547447
LinkDB
All DBs
Position
Unknown
AA seq
1971 aa
AA seq
DB search
MRGPAAGEELLEEADNDEDVSGRAKLSCARGGRPRELSFSSSEDDDGVLEGLEEFFAEER
VAAQKKKKCKKLKDCKAAKIKRRKKEGSNDEISDNDEEIEEKSESEGSDYSPNKKKKKKL
KEKKEKKNKRKKKDEEEDDDDGGLKEPKSSAQLMEEWGLDDVDYIFSEEDYHTLTNYKAF
SQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTVAP
ALAASPQQPALPPVIRKAKTKEGKGPGVKKKIKSSKDGKKKGKGKKMAGLKFRFGGIPSK
RKKGSSSEEEEREESDFDSASINSSSVRSECSAGLGKRGKRRRKKKRIEEGDGYETDHQD
YCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKEEEDEEE
EGGEEEEDDHMEFCRVCKDGGELLCCDTCPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPL
KGKVQRILHWAWKEPPAPPPSVPPAPDAELALPLPKVLEGIPEREFFVKWAGLSYWHCSW
VKELQLELYHTVMYRNYQRKNDMDEPPAFDYGSGDEDSQREKRKNKDPHYAKMEERFYRY
GIKPEWMMIHRILNHSFDKKGDIHYLIKWKDLPYDQCTWEIDEIDIPYYENLKLLYWNHR
ELMLGEDTRPLKKLNKKGKKLKEEKLEKPPETPLVDPTVKFDKQPWYIDATGGTLHPYQL
EGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWE
REFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTS
YELITIDQAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEE
LFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTE
LIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE
APVLPNGSYDGNSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGY
KYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPH
NDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMT
KQELDDILKFGTEELFKDDVEGMVSQGQRLTMPDAVTPFSDTLSTKGGAVTPGMKKKHGG
TPPGDSKDVDDSSVIHYDDAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDG
VEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQE
WQDELSDNQSEYSIGSEDEDEDFEERPEGGRRQSRRQLKSDRDKPLPPLLARVGGNIEVL
GFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADG
AETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDMILEGPESKKCNEM
VSSDPNTPVPASPAHVHAGPLALAEKTDPPLGFQEEKDQVEQKSRRASDSQVPGSTEKVE
SEEYQENCESKEKLKEEKQDESEKTELSPEPLGKDEGVQEKEKALEKPESNSSPGKGEDK
EVKPAEDTKVEEKEQSEAQQNGDKEEEDGKKDDRNVNFRFMFNIADGGFTELHTLWQNEE
RAAISSSKIYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYVILNEPFKSEIHKGNYLE
MKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLS
KESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRL
TTRGGEPAVQQGSFGSSQIYNNSFGPNFRGPGPGGIVNYSQMPLGPYVTDI
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcccggcggccggcgaggagctgctggaggaggcggacaacgatgaggacgtg
tcggggagggcgaagctgagctgtgcgcggggaggccgcccacgtgagttgtccttctcg
tcctcagaagatgatgatggggtcctggaagggctggaggagtttttcgcggaggagcga
gttgctgcgcagaaaaaaaagaaatgcaagaagctgaaagactgcaaggcggccaaaatc
aagaggaggaagaaagaggggagcaatgatgagatatcagacaatgatgaggagattgag
gagaaatctgagagtgaaggaagtgactattcccccaacaagaagaaaaagaaaaaactg
aaggaaaagaaggagaaaaaaaacaagcggaaaaagaaggatgaagaggaggatgacgat
gatggggggctaaaggagcctaagagctcagcccagctgatggaagaatggggccttgat
gatgtagattacattttctcagaagaagattaccacactcttactaattacaaggctttc
agccaatttctcaggcctctgattgccaagaagaaccccaagatccccatgtccaagatg
atgactgtgcttggtgccaagtggcgagagttcagtgccaacaacccgttcaagggcagc
tcggcggcggcagcagcagcagctgtggctgcagcagtggagactgtcacggttgcccca
gcactggctgccagtccccagcagcctgcactgccccctgtcatcaggaaggcaaaaacc
aaggaaggcaagggcccaggtgtgaagaagaaaatcaagagctcgaaagatgggaagaaa
aaggggaagggaaaaaagatggcaggcctaaaattccggtttggaggaatccccagcaaa
aggaaaaagggctcctctagtgaagaggaagagcgggaggaatccgactttgacagcgcc
agcatcaacagctcctccgtgcgctccgagtgctcggctggcctggggaagagagggaag
aggaggagaaagaaaaagaggattgaagaaggggatggctacgagacggaccaccaggac
tactgcgaggtgtgccagcagggaggggagatcatcctgtgtgacacctgtccgcgtgcc
taccacctcgtctgcctggaccccgagctggagaaagcccccgagggcaagtggagctgc
ccacactgcgagaaagagggcatccagtgggagccaaaggaggaggaggatgaggaggag
gaaggtggcgaagaagaggaggatgaccacatggagttctgccgtgtctgtaaggatgga
ggggagctgctgtgctgcgacacgtgcccgtcctcttaccacctgcactgcctgaaccca
cccctgccagaaatcccaaatggtgaatggctctgccctcgttgtacatgccctcctttg
aagggaaaagtacagcgcatcctgcactgggcctggaaggagcctccggccccgccgccc
tctgtgccgcctgccccagatgcggagctggctctgccgctgccgaaggtgctggagggc
atcccagagcgtgagttcttcgtcaagtgggcagggctctcctactggcactgctcctgg
gtcaaggagctacagctggagctctaccacaccgtgatgtaccgcaactaccagaggaag
aacgacatggacgagccgccggcctttgattatggctctggagacgaggacagccagagg
gagaaaaggaagaacaaggaccctcactacgcaaagatggaggagcggttctaccgctat
ggcatcaagcccgagtggatgatgatccaccgcatcctgaaccacagctttgataaaaag
ggggacatccattatctgatcaagtggaaagatctgccgtatgaccagtgcacctgggag
attgatgagatagacatcccatactatgaaaacctcaagctcctctactggaatcacagg
gagctgatgctgggggaggacacacgtcctctgaagaagctgaacaagaaggggaaaaag
ctgaaagaggagaagctagaaaagcctccggaaactcctcttgttgatcctacggttaag
tttgacaagcagccttggtacattgatgccacaggaggcacgctgcatccttaccagctg
gaagggctcaactggttgagattttcctgggcccaaggcactgatacgatcctggctgat
gagatgggactggggaagactgtgcagaccattgtgttcttgtattccctgtacaaggag
ggccactccaaggggccgtacctggtcagcgccccgctctccaccatcatcaactgggag
cgagagtttgagatgtgggcgcccgacttctatgtcgtgacctacactggggacaaggag
agccgctcggtcatccgggagaatgagttctcttttgaagacaacgccatccgcagcggc
aagaaggtgttccgcatgaagaaggaagcccagatcaagttccacgtcctgctcacctct
tatgagctgatcaccatagaccaggcggtgctgggctccattgagtgggcttgtctggtg
gtggacgaagcacacagactgaagaacaaccagtccaaattctttagggtattaaacagt
tacaagatcgattacaagttactgcttactgggactccactccagaacaacctggaagag
ctcttccacctgctcaatttcctgactcccgagaggtttaataacctggagggcttcctg
gaggagtttgcagacatctccaaggaggaccagatcaaaaagctccatgacctgctgggc
ccccacatgctgcgccggctcaaggcagacgtgttcaagaacatgccggccaagacggag
ctgattgtcagagtggagctgagccagatgcagaagaagtactacaagttcatactaaca
cggaattttgaagccctgaactcgaaaggtggagggaatcaggtctcactgctcaacatc
atgatggacctgaagaagtgctgtaaccatccatacctcttccctgtggccgctgtggag
gctccggttctgcccaatggatcctatgatgggaattctttggtcaagtcttctggaaaa
ctgatgctgctccaaaagatgctgaagaagttacgggatggaggtcacagagttctgatc
ttctcccagatgacgaagatgttggacctgctggaggacttcctggagtacgagggctac
aagtacgagcgcatcgatgggggcatcactggaggcctgcgccaggaagccattgacagg
ttcaatgctcctggtgctcagcagttctgctttctcctctctacccgtgctggtggtctg
ggcataaaccttgctacggctgacacagtcattatttatgattctgactggaatccccac
aatgacatccaggcgttcagcagagcgcaccgcatcgggcagaacaagaaggtgatgatc
taccgctttgtgaccagagcctctgtggaggagcgcatcacccaggtggccaaaaggaag
atgatgctcacccacctggtggtccgtcccgggcttggctccaagtcaggctccatgacc
aagcaggagctggatgacatcctgaagtttgggacggaagagctcttcaaggatgatgtg
gaaggcatggtgtctcagggacagcggctcaccatgccggacgccgtcacccctttctct
gacacgctgtccaccaaagggggtgcagtgactcctggcatgaaaaaaaagcacggtggc
accccaccaggtgacagtaaggacgtggatgacagcagtgtgatccactatgatgatgct
gctatctctaagcttctggaccgaaaccaggacgcgactgatgacacggagctgcagaac
atgaacgagtatctcagctcctttaaagtggcccagtatgttgtgagagaagaggatggt
gtggaagaggtggaacgtgagatcatcaaacaagaggagaatgtggaccctgactactgg
gagaagctgctgcggcatcactatgagcagcagcaggaagatctggccaggaatttgggg
aaggggaagagaatccgcaagcaggtcaattacaatgatacctcacaggaggaccaagag
tggcaggacgagctctctgacaaccagtctgagtactccattggctctgaggacgaagat
gaagactttgaagaaagaccagaaggtggcagaagacaatcacggagacagctgaagagt
gaccgggacaaacctctccctcctttgctggcaagagttgggggcaatattgaggttctc
gggttcaatgcccgccagcgcaaggccttcctgaacgccatcatgcggtggggcatgccg
ccccaggacgccttcaactcccactggctggtgagggatctgcgagggaagagcgagaag
gagttcagggcttacgtctccctgttcatgcggcatttgtgtgaacctggagcagacggt
gctgagacctttgctgacggggttccccgggaggggctgtcgcggcagcacgtgctgacc
cggatcggagtgatgtcgctagtaaggaagaaggtgcaggagtttgagcatgtcaatggg
aagtacagcaccccagatatgattctggagggcccggagagcaagaagtgcaatgaaatg
gtttcttcagatcccaacacccctgtccccgccagcccagcgcacgtacatgcaggacct
cttgcccttgcagaaaaaacagatccaccgcttggattccaggaggaaaaggaccaagtg
gagcagaagtccaggagagcatctgacagccaggtgcccggaagcactgagaaggtggaa
agtgaagagtaccaagaaaactgtgaaagcaaggagaaactgaaggaagagaaacaggac
gagagtgaaaaaactgagctttctcctgagcccctggggaaagatgagggagtccaagaa
aaggagaaggctttggaaaagccagagtcaaacagcagtcctggtaaaggggaggacaaa
gaagtcaagccagcagaggataccaaggtggaagagaaggagcaaagtgaggctcagcaa
aatggtgacaaagaagaggaggatggaaagaaggatgacagaaacgtgaactttagattc
atgttcaacattgctgacggaggctttacagagctgcacacgctgtggcagaatgaggaa
agagctgccatctcctccagcaagatctatgacatctggcaccgcaggcacgactactgg
ctgctggcagggatcgtcacccacggctacgcccgctggcaggacatccagaacgacccg
cgctacgtgatcctgaacgagcccttcaagtcagagatacacaaagggaactacctggag
atgaagaacaagttcctcgcccggcgcttcaagctgctggagcaggccctggtgatagag
gagcagctgcggcgggcggcgtacctgaacatgactcaagaccccaatcacccggccatg
gcattgaacgcccgtctggctgaagtggagtgccttgccgagagccaccagcatctctcc
aaagagtccctcgcggggaacaagcctgccaatgccgtcctgcacaaggtgctgaaccag
ctcgaggagctgctgagcgacatgaaggctgatgtgacgcgcttgccctccatgctgtcc
cgcatccctcctgtggctgcacggctgcagatgtcggagcgcagcatcctcagccgcctg
accacgcgtggcggggagcccgcggtgcagcagggctccttcggttcctcccagatctac
aacaacagctttggaccgaatttcagaggtcctgggccgggtgggattgtcaactacagc
cagatgcctctggggccctatgtgacagatatttag
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integrated database retrieval system
