KEGG   Tympanuchus pallidicinctus (lesser prairie-chicken): 128084862
Entry
128084862         CDS       T08967                                 
Symbol
NPHP4
Name
(RefSeq) nephrocystin-4 isoform X1
  KO
K16478  nephrocystin-4
Organism
tpai  Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:tpai00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:tpai03037]
    128084862 (NPHP4)
Cilium and associated proteins [BR:tpai03037]
 Primary cilia and associated proteins
  Nephronophthisis-related proteins
   128084862 (NPHP4)
SSDB
Motif
Pfam: TBX2-3_RD RovC_DNA-bd
Other DBs
NCBI-GeneID: 128084862
NCBI-ProteinID: XP_052547455
LinkDB
Position
Unknown
AA seq 1383 aa
MAEWERLFAWSRAVPPHTQRRHGVPEPSVPFQCVLKCLEGSVVTQQSPAKLQLRVSLFDA
THRHFFGHTWHSSTRTPRSPPGQPPCVLFNEAVYFHTSLSHPSVTAVVEVVAVAPTPEGL
ARNVSCGFGLIPLFDSRREPSDLAAKGRVLKLYHGTPRALLHPLLQDPLEKNKYMTIMEN
SHLQYSLKLHLPLEKVFHLLPENLLVSGLQKIPGLLPAHGDTGDIFLKPRLMRTAPCYLD
QLCVLLHPSLEKFEEELLEQLSSDRLLKQEVGSALCVQERRLRVAVHNGLRFVQAPQVAV
LQPAAEAARRQTTSSTDSTAEQALLLRSRLQLSEMVAHPAFGVCFQLEYVVCAAAKAAAG
SALGPAAAMHTVRWALWSPFLGATSSPVLLPLRGGAHPSPGQTLVYRNPADSESSQQVKR
IASGSVQFHVSTDAEHRVTSTDVSSKAGKEPEEPPTPSLSLRSPPHPAASTQGPGLSLSQ
LLASPQSRDGRTVPRSRSAPAPRPCSTQDGRAECTAGITHLEADLWPGSPRADASSSEHL
WAPPFVPPQLPVTAVALPAGSAALSRASLALLHTSGFPEILDDNKEPLEVTEPLNPAHFS
PRLEEVDALQSNEIILQFLAFSRAPQDALEGTWPRTVFLTFQFYRFPPVSTPRLLLVDAD
GERAVGSAVPAQVLLQLNEDGTPNTEAPGLQLRYVVDPTFLRPGEQRVFVRYLAEQSLQM
DIWDGDSLLLVGSAAVKLKPLLRQGRPAVRTLHELEVVTTEYEQDAPLAAGRDVLCPLGA
RVAVRGRLHLCLANVGHRCEETPMSPRHPLLSHTHVVSSPACGRSLSLHSSGDVRVSRPR
RLAEVDSELAAILCSLRLEQSPERLHAPRETAAIQQHTMQCLAALQQHVNGDRRIPQHEG
CSKRCTQYLQIIDAYRERTKQRYISQMLSQAITVTHTVYAMLGTAEFFEFALKNPYSTQH
TVTVEVDHPELSVILDPREWRHFKELTQTATPLEEDMFHLRDDLRPQIYLRPKETVHIPF
RYQMFSTEPAVTAVPDPMGLSKEEDAGRAQEEPTAAQMRLIQVAFCVSRDKPIALLQVKV
EPRPPVVDQTFRFFHPELTFLKKAFRLPPWHTLPGAPVRMPSGDPEVYVRCSDPNVICET
KNMGPGEPQDVFLKVAGGPSPQIKTFFVVIYTDPWLATPLHIWQFYLHSLQRLDVSCTAG
QLSRLAVPLRGTRTLRRVKAFCSHPHELKVDPAGVFTLPPNGVLDLFVGVKPRRAGSRFF
YLNLVDVESHQLVSSWLLCITCRQPLISKAFEITIPAGSGKGSNKRITYTNPYPTRRLYF
LVTSRPDLLQFKEDSFQVAGGEMYTIGLRFAPSQSVGEEEILIHINDHQDKNEETFCVKV
IYY
NT seq 4152 nt   +upstreamnt  +downstreamnt
atggctgagtgggagaggctgtttgcatggagccgtgctgtcccacctcacacccagcgc
agacacggcgtgccggagccctcggtgcctttccagtgtgtcctgaagtgcctcgagggc
tctgttgtcacgcagcagtccccagctaagctgcagctccgcgtgtctctcttcgatgcc
acccaccgccacttctttggccacacgtggcacagcagcacccggaccccccgcagcccc
ccaggacagcccccctgtgtgctcttcaatgaggccgtgtatttccacacctcgctcagc
caccccagtgtcacagccgtggtggaggtggtggctgtggcccctaccccagaagggctc
gcacggaacgtgtcgtgtggcttcgggctcatcccactgtttgacagcaggcgggagccc
tcagacctggctgccaagggcagagtgctcaagctgtaccacgggacgccacgtgccttg
ctgcacccgcttctccaggaccctctagaaaagaataaatacatgactataatggagaac
agccacctgcagtacagcctgaagctccacctgcctctggagaaggtatttcatctcctt
cctgaaaacctcctggtgtctggcctgcagaagatccctggcctgctgcctgcacatggg
gacacaggtgacatcttcctgaagccgcggctcatgcggacggccccctgctacctggac
cagctctgcgtgctcctgcacccttctctggagaagtttgaggaagagctgctggagcag
ctgagcagcgaccgcttgctgaagcaggaggttggcagcgcgctgtgcgtgcaggagcgg
cggctgcgtgtcgctgtgcacaacgggctgcgcttcgtccaggccccgcaggtggctgtg
ctgcagccagcagctgaggcggcccggaggcaaaccaccagcagcacggacagcactgca
gagcaggcgctgctgctgcggagccgcctgcagctgagtgagatggttgcccatccggcc
tttggggtctgcttccagctggagtacgtcgtctgtgctgcagccaaggctgcagctggc
agtgcgttgggcccggcagctgccatgcacacggtgcgctgggcgctttggagccccttc
ctgggggccacctcctccccagtgctgctgcccctgcgtggcggcgcccatcccagcccc
gggcagaccctggtgtacagaaaccctgcagacagcgagagctcccagcaggtgaagcgc
attgcgtcgggttctgtccagttccacgtttccactgatgcagaacatcgtgtaacttcg
acagacgtctcgagtaaagctgggaaggagccggaggagcctcctacgccatcgctgagt
ctgcgctccccgccgcacccggcagcctccacgcagggaccagggctgtctctctcacag
ctgctggcctcgccgcagagcagggacgggcgcacggtgccacggagccgcagcgccccg
gcgccccggccctgcagcacgcaggatggccgcgctgagtgcactgctggcatcacacac
ctggaggctgacctgtggccgggctccccacgtgctgatgcctccagcagcgagcacctg
tgggcgccgccttttgtgccgccgcagctgcccgtcacggccgtggcgctgcctgctggg
agcgctgcgctcagccgtgcctcgctggcgctcctgcacacctctggcttcccagagatc
ctcgatgacaacaaggagcccctggaggtcacggagccgctgaaccctgcgcatttcagt
cctcggctggaggaagtggatgctctgcaaagcaatgaaataatcctgcagttccttgca
ttcagtagggctcctcaggatgcactggaagggacgtggcccaggacagtgttcctcacc
ttccagttctaccgcttcccaccggtcagcacaccgcggctgctgctggtcgatgcggat
ggcgagagggcggttgggtctgctgtgccagcacaagtgctgctccagttgaacgaggat
gggaccccaaacactgaagccccggggctgcagctgaggtacgtggtggaccccaccttc
ctgaggcctggggagcagcgtgtcttcgtgcgctacctggctgagcagagcctgcagatg
gacatctgggacggagactctctgctgctggtcggctctgctgcggttaaactgaagccc
ctgctgcgccagggccggccggctgtcaggacgctgcatgagctggaggtggtcaccact
gagtacgagcaggatgcaccactggcagcaggcagggatgtgctgtgccctctgggcgcc
cgcgtggccgtgcgaggccgcctgcacctctgcctggccaacgttggtcaccgctgtgag
gagacccctatgagccccaggcacccattgctgtcccacacccatgtcgtgtcctctccg
gcctgtggccgttcgctgtccctgcactccagcggggatgtcagggtatctcggccacgc
aggctggctgaggtggatagcgagctggcagccattctgtgcagcctacggctggagcag
agcccagaacgcctgcatgccccgcgtgagaccgcggccatccagcagcacacgatgcag
tgcttggcagcgttgcagcagcatgtgaatggtgacaggaggatcccccagcacgagggc
tgctccaagcggtgcacgcagtacctgcagatcatcgatgcctatcgagagcgcaccaag
cagcggtacatctcccaaatgctcagccaggccatcaccgtcacccacactgtgtacgcc
atgctgggaacggccgagttctttgagtttgccctgaagaacccctacagcacccagcac
acggtgacggttgaggttgaccaccccgagctcagtgtcatactggacccaagggaatgg
aggcacttcaaggagctgacccagacggccacccctctggaggaggacatgttccacctg
cgggatgacctcaggcctcagatctacctgcgccccaaggagactgtgcacattcccttc
cgataccagatgttctccacggagccggctgtcacagcagtgccggatccgatggggctg
agcaaagaagaggatgcagggagggcgcaggaggagccaacggctgcgcagatgaggctc
atccaggtggctttctgtgtgagcagggacaaacccatcgccctgctgcaggtgaaggtt
gagccccggccccccgtggtggatcagaccttccgcttcttccaccccgagctgaccttc
ctgaagaaggccttccgcctgcctccatggcacacgctcccaggtgctccggtgaggatg
ccgagcggtgatcctgaggtctatgtccgctgcagtgaccctaatgtcatctgtgagacc
aaaaatatgggtcctggggaaccgcaggacgtcttcttaaaagtagctggaggaccaagc
ccacagatcaaaacgttctttgttgttatttatacggacccctggctggccacgccgctg
cacatctggcagttctacctgcactccctgcagcgtttggatgtcagctgcactgcaggg
cagctctcccgcctggccgtcccgctgcgcggcacccgcaccctgcgcagggtgaaggcg
ttctgctcccatccccacgagctgaaggtggacccagcaggtgtgttcacgctgcccccc
aatggggtcctggatctgtttgtgggtgtgaagccacgccgggctggcagcagattcttc
tacctcaacctggtggatgtggagagccaccagctggtgtcctcctggctgctctgtatc
acctgccgacagccgctcatttccaaggcctttgagatcaccatccctgcaggcagcggg
aagggctccaacaaacgcatcacctacaccaacccctaccccacacgcaggctgtacttt
ctggtcaccagccggcccgacttgctgcagttcaaggaggactccttccaggttgctggg
ggggagatgtacaccatcgggctgcgcttcgccccgagtcagagcgtgggtgaggaggag
atcctgatccacatcaacgaccaccaggacaagaacgaggagaccttctgcgtgaaggtc
atctactactga

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