Tympanuchus pallidicinctus (lesser prairie-chicken): 128085016
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Entry
128085016 CDS
T08967
Symbol
EXOSC10
Name
(RefSeq) exosome component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128085016 (EXOSC10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128085016 (EXOSC10)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
128085016 (EXOSC10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
GATA_AreA
Motif
Other DBs
NCBI-GeneID:
128085016
NCBI-ProteinID:
XP_052547820
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MAAAVGEGKGCAAAGSPEVRGGRGGSGGLPAEQEREGNPAAAPVLPGFDDVDAFVKHALG
TMVATTKASSGLPQPGDEYDFYRSFPGFRAYCEAQGQRLLHCMSRVMQYHGCRSHMRDHS
KVTELEDKFDMLVDSNDVILERVGILLDEAAGVNKNQQPVLPAGLQMPQTIISSWNRKAG
EYHKRTKSETFRLLHAKNITRPQLKFKEKIDNSNTPFVPKLFIKPNALKPLPEALTKSGR
ERKERPEDLDVPAALADFIHQQRTQQTEQDMFAHPYQYELEHFSPPDGVLKKPEPQMYRP
MEETPCHFITTLDELVELNKKLMNCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDT
LELRSDMSILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLGKHS
LDHLLKLYCSVDADKQYQLADWRIRPLPEEMMQYARDDTHYLLYIYDKMREALWERGNEQ
PAQLRVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQLTAFRLLFAWRDKTAR
QEDESIGYVLPNHMLLKIAEELPKEPQGIIACCNPVPPLVRQQINELHLLVQQAREMPLL
KSEIALTVKKRTSLSNPERLENAFFGPHDSSRIPMDDFQNNSALESSSAPVLERDSLFLD
SERTMNIQGVQPESACLVATATVSIFSECDKDEGSEKVLTAAQKKAQRIMESFENPFRMY
LPSEQNPAYVSQSAKFDPSSKIYEISNRWKLMSKTQVQKESRDEAKKKAAQQSAARDQAQ
KEYKEATENIVSVRQQAMQEQANRKRERVMSETAPELPKPEKKRPKASQQPEELEAPKQF
TPFDYSKFNFKVFAGSSKSKQSAQFDPARQVHTGKKFAGANKLQQPAGNRSMSYLAGKAD
RGSKHHWPKR
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgccgtcggcgagggaaaaggctgcgcggcggcggggagcccagaggtccga
gggggcagaggggggtcgggggggctgcccgcggagcaggaaagagaagggaaccccgcc
gcggcgccggtgctgcccggcttcgacgacgtcgacgccttcgtcaagcacgccctcggc
accatggtggccaccacgaaggcttccagcgggctcccgcagcctggcgatgagtacgac
ttctaccgcagcttccctgggttccgggcgtactgcgaggcgcagggccagcggctcctg
cactgcatgagcagagtgatgcagtaccacggctgccgcagccacatgagagatcacagc
aaagtcacagagctggaagataagtttgatatgctggttgactccaatgacgtcattctt
gaaagagtgggtattttactggatgaagcagcaggagtgaacaaaaaccagcagcccgtc
cttcctgctgggctgcagatgccacagacgatcatctccagctggaaccgcaaggcagga
gaataccacaaaagaactaagtctgaaaccttccgactgcttcacgccaagaacatcact
cgcccacagcttaagtttaaagaaaagattgacaattctaacactccctttgtacctaaa
ctttttatcaagccaaatgctttgaaaccattgcctgaagccctcacaaaaagcggacgg
gaacgaaaggaacgccccgaagacttggatgtcccagctgctttggcagacttcatacac
cagcagaggacgcagcaaactgagcaagacatgtttgctcatccttaccagtatgaactg
gagcacttttctccaccagatggagttcttaagaaaccagaaccccagatgtacagaccc
atggaggaaacaccttgtcattttatcactacgctggatgagctggttgaactgaacaag
aagcttatgaactgtaaagagtttgctctggacttagagcaccattcctacaggagcttc
ctgggcttgacgtgtctgatgcagatttccactcgaacagaagacttcattattgatacg
ctggagctgcgcagtgacatgagcatcctcaatgagaccttcacagacccagcaattgtg
aaggtcctgcacggtgctgattcagatgtggagtggctgcaaaaagactttggcctgtac
ttggtgaacatgtttgatactcaccaagctgctcgtcttctcaatcttggcaagcactct
ttggaccacttgctgaagctgtattgcagtgtggatgctgacaagcagtaccaactggct
gactggaggatacgccctttgccagaggaaatgatgcagtatgcccgtgatgacactcac
tacttgctctacatttacgataagatgagggaggcactgtgggagagaggcaacgagcag
cctgctcagctgagggttgtttggcagcgcagcagagacatctgcctgaagaaatacatc
aagcccctcttttcagatgagtcctaccttgagctctacaggaggcagaaaaaacacctc
aacacacagcagctgacagcatttaggttgctgtttgcgtggagagacaagacagcgcgt
caggaagatgagagtataggatacgtgttaccaaaccacatgttactgaagatagcagag
gagctgcccaaagagccccagggtatcattgcttgctgcaatccagtcccacctctggtt
cgccagcagattaacgagttgcatcttctcgttcagcaggcccgagagatgcctcttctc
aagtcggagattgctttgacagtcaagaagaggacatctctctccaaccctgagaggctg
gagaatgccttctttggaccacacgacagttcccggattcctatggatgattttcagaat
aattctgctttagaatcttcgtctgcaccagtcttggaacgtgattctctctttttggac
agtgagaggacaatgaatattcagggtgttcagccagagtcagcgtgccttgttgctact
gccactgtcagcatattcagtgaatgtgataaagatgaaggaagtgagaaggttttaaca
gctgcacagaaaaaagctcagcgtataatggagtcctttgaaaatccattcagaatgtat
ttgccttcagaacagaatcctgcctacgtctcacagtctgcaaagtttgacccatcatca
aaaatttatgaaatcagcaatcgatggaagttgatgagtaagacacaagtacagaaggaa
tccagggatgaagcaaaaaagaaagcagctcagcagtcagctgctcgtgaccaagcacag
aaggagtacaaagaggcaacagaaaacattgtgtctgttcgtcagcaagctatgcaggag
caagctaataggaagagggagagggtcatgagtgaaacagcaccagaactgccaaaacca
gagaagaaacggccaaaagcctcccagcaaccagaggagctggaagcaccgaagcagttt
accccctttgattacagcaagttcaacttcaaagtgtttgcgggaagcagcaaatcgaag
cagtcagcacagtttgatcccgccagacaagttcacacaggcaagaaatttgctggagcc
aacaaacttcaacaaccggctggaaaccgaagcatgtcctacctggcagggaaagctgat
aggggttccaagcaccactggccaaagagatag
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