Tympanuchus pallidicinctus (lesser prairie-chicken): 128085327
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Entry
128085327 CDS
T08967
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128085327 (DICER1)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128085327 (DICER1)
microRNA pathway
RISC loading complex
128085327 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
ResIII
DEAD
Helicase_C
Amidoligase_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128085327
NCBI-ProteinID:
XP_052548467
LinkDB
All DBs
Position
Unknown
AA seq
1921 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLA
IQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIKKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYIDKSGLYERLLRELDEALHFLNDCNISVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSEME
TEPIVDDDDVFPPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISIPSSSLVENENYCKHSTIVVPENAAHQGANR
TSSAEKHDQMSVSYRTLLDESPSKLQIDVSAELAAINGVSYNKNLANGNCDLVNRDFCQG
NQLNYCRQEIPVQPTTSYPIQNLYSSENQPKPSNECTLLSNKYLDGNANRSTSDGCPKMT
VTTSTSTALNLSKDKMDSEKNTSSGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYIVNQDKSNTDKWEKDETTKENLLANGKLDYGDDDEEDEDLMWRLPKEETDFEDD
FLEYDQEHIKFIDSMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSLGNVPFSSDFDDF
DYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWESTLCATGENCNSEQKNLSPNS
VSACILNSEPSLYKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKA
YLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN
NTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEED
IEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEME
PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPN
S
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgct
tcctccccaatgggtccattttttggactaccgtggcaacaagaagcaattcatgataac
atttacacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataataca
atagtctgtttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggggatttcaacaaaaatggaaaaagaactgtgttcttggtc
aactcagcaaatcaagttgctcagcaagtatcagctgtcaggacacattcagatcttaaa
gtgggagagtattcaagtttagaggtgactgaatcatggacaaaagagaagtggagtcag
gaattctctaagcatcaggttctggttatgacatgtcatgttgctttgactgttttgaga
aatgagtatttatccctgtcaaatattaatctactggtgtttgatgagtgccatcttgca
atccaggaccatccataccgtgaaattatgaagatctgtgaggattacccatcttgccct
cgaatcttgggattaactgcttctattttaaatgggaagtgtgatcctgctgagttagaa
gagaagataaagaaactggagaaaatattaaagagcaatgctgaaactgcaactgatttg
gtggtcttagatagatatacttctcagccatgtgagattgttgtagactgtggaccatat
attgacaaaagtggattgtatgaaagactattaagggaattggatgaggcacttcatttt
ctaaatgactgcaacatatctgtacattcaaaggaaagagattctacgttaatttctaaa
cagatattgtcagactgtcgagctgtgttggttgttctgggaccctggtgtgcagataag
gtagctgggatgatggtgagagagctacagaagtatatcaaacatgagcaagaggagctg
cacaggaaatttttattgtttacagacactttcttaaggaaaatacatgcactctgtgaa
gagcatttctcacctgcctcacttgacctgaaatttgtaactccaaaagtaataaagctg
cttgaaattttgcgcaaatacaaaccatacgaacggcagcagtttgaaagtgttgaatgg
tataacaacagaaatcaggataattacgtatcgtggagtgattctgaagatgatgatgag
gatgaagaaattgaggagaaagagaagccagagactaatttcccatctccttttacgaat
attttatgtggaattatttttgtggaaagaagatacacagcagttgttctaaataggttg
ataaaagaagctggcaaacaagatccagaactggcttacatcagtagcaatttcataact
ggacatggcattggcaagaatcagcctcgtaacaagcagatggaagtagaattcagaaaa
caggaagaggttcttagaaaatttcgagcacatgagaccaatcttcttattgctaccagt
attgtagaagagggtgttgacataccaaaatgcaatttggtggtgcgttttgatttgccc
acagaataccgttcctatgtgcagtcaaaaggaagagctagagcaccaatttccaattac
ataatgttagcagatacagacaaaattaaaagttttgaagaagatcttaagacatataaa
gcaattgagaagatcctgagaaataaatgctcgaaatctgttgataccagtgaaatggaa
actgaacccattgttgatgatgatgatgtgtttccaccctatgtgttgaggacagatgag
aacagtccaagagttactatcaacacagctattggacacataaataggtactgtgctaga
ttaccaagtgatccatttacacacctagctcccaagtgtaaaaccagagaactacctgat
catacattctactctactctctacctgccaatcaactcacctcttcgagcgtcaattgtt
ggtcctccaatgagttgtgcaagattggctgagagagttgtagctcttatttgctgtgaa
aaactgcacaaaattggtgaactggatgatcatttgatgccagttggaaaagaaacggtt
aaatatgaggaagagcttgatttacatgatgaagaagaaaccagtgtgccaggaagacca
ggctctacaaaaagacgacagtgctaccctaaagctattccagaatgtttgagggatagt
tatcccaaacctgatcagccctgttacctgtatgtaataggaatggtgttaactactcca
ttgcctgatgagctcaactttaggagacgaaagctatatcctcctgaggatacaacaaga
tgttttggcatattgacagccaaacctatacctcagattcctcactttcctgtgtatact
cgctctggagaggttacaatatctattgagcttaagaaatctggttttactctgtctttg
caaatgcttgagctgataacacgactccaccagtacattttctcacatattcttcgtctt
gagaaacctgcactagagttcaaacccacggaagctgattcagcctactgtgttctacct
cttaacgttgttgatgactccagcactttggacattgactttaaatttatggaagacatt
gaaaagtctgaagcacgtacaggcattcccagtacacagtatacaaaagaaatgcctttt
attttcaagttagaagactaccaggatgcagttatcattccacggtatcgaaattttgat
cagcctcatcgattctatgtagctgacgtatacactgatcttactccactcagtaaattc
ccttcccctgaatatgaaacttttgctgaatattataaaacaaaatataatcttgatctg
accaatctcaaccagccactgctggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaaggggaaagcacttccactaagcagtgctgagaagagg
aaagcaaaatgggaaagcctgcagaataagcagatactggttcctgagctatgtgctata
catcctattccagcatctttgtggagaaaagcagtttgcctccccagcatactgtatcgc
ctgcactgccttttgacagcagaagaactaagagctcaaacagccactgatgctggtgta
ggggttaaatcactacctgcagatttcagatatcctaacctggacttcggatggaaaaaa
tctattgacagcaaatctttcatctctatacctagctcctctttggtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataga
acctcttctgcagaaaaacatgaccaaatgtctgtgagttacagaacactgcttgatgag
tcacccagtaaactccaaattgatgtctcagcagaacttgcagcaattaatggtgtttct
tataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaagga
aatcagctgaattactgcaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacagcagtgagaaccagcccaagcccagcaatgaatgtactctactgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccaaaatgaca
gtgaccaccagtacttcgacagctcttaatctttcaaaagacaaaatggattctgaaaag
aacacttccagtgggtactcctcaaaaactcttggtcctaatcctggtctcattcttcag
gctttgactctttcaaatgctagtgatggatttaatctggagcgactagaaatgcttggt
gattcatttttaaagcatgccatcactacgtacttgttttgcacttatcctgatgcacac
gagggacggctgtcatacatgagaagtaaaaaagtcagcaactgtaacttgtatcgcctt
ggaaaaaagaaaggactgcctagtcgaatggtggtatcgatttttgatccccctgtcaac
tggcttcctcccggttacatagtaaaccaggacaagagcaacactgataaatgggagaaa
gatgaaacgacaaaggagaatttgttggctaatggtaaacttgactatggtgatgacgat
gaagaggatgaagacctaatgtggagattgcccaaggaagaaacagactttgaagatgat
tttttggagtacgatcaagagcatatcaaattcatagatagtatgttaatgggatcaggg
gcttttgtgaagaaaatttctctctctcacttttcaaccactgattcaaattatgaatgg
aaggcacccaaaaagtcatccctgggtaacgttccgttttcatcagattttgatgatttt
gactatagttcttgggatgctatgtgctatctggatcctagcaaggctgttgaagaggat
gattttgtagtcggcttctggaatccatcagaagaaaactgtggtgtcgatgcaggaaaa
cagtctatctcatatgatttgcatacagagcagtgtattgctgacaaaagcattgcagac
tgtgtggaagccctgttgggctgctatctaaccagctgtggtgaaagagctgctcagctt
ttcctgtgttcactggggctgaaggtgctccctgtaattaaaaagactgattgggaaagc
actctgtgtgcgaccggagagaactgtaacagtgagcagaagaatctttcaccaaactct
gtttctgcttgtatacttaattcagagccttctctttataaggacctggagtatggttgt
ttgaagatcccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccctgaatcac
cttatttctggttttgaaaactttgagaagaaaattaattacagttttaagaacaaggcg
tatcttcttcaggcatttactcatgcctcataccattataataccattactgattgttac
cagcgcttagaattcctgggagatgcaattttggactacctcataaccaagcacctttat
gaagacccacggcaacactcaccaggagttcttactgacctgcgatctgctctagtcaat
aacaccatttttgcatcgctagctgtaaagtatgactaccacaagtacttcaaagctgtc
tctcctgaactgtttcatgttattgacgactttgtgcagtttcaaatggaaaagaatgaa
atgcaaggaatggattccgagctcagaagatctgaagaagatgaagaaaaggaggaagac
attgaagtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatg
gatagtggaatgtctttggaaatggtttggcaagtgtactatccaatgatgaggccatta
atagaaaaattttctgctaatgtgccccgttccccagtgcgagagctgcttgagatggag
ccagagacggccaaatttagtcctgcagaaagaacttacgatggaaaggtcagagtaact
gtggaagttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaa
tctgcagctgcaagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaac
agctga
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