Tympanuchus pallidicinctus (lesser prairie-chicken): 128085584
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Entry
128085584 CDS
T08967
Symbol
VIM
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128085584 (VIM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128085584 (VIM)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tpai04812
]
128085584 (VIM)
04147 Exosome [BR:
tpai04147
]
128085584 (VIM)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
128085584 (VIM)
Cytoskeleton proteins [BR:
tpai04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
128085584 (VIM)
Exosome [BR:
tpai04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
128085584 (VIM)
Exosomal proteins of other cancer cells
128085584 (VIM)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
TolA_bind_tri
TPR_MLP1_2
DUF7491
RBD-FIP
DUF4515
Sec10_N
Motif
Other DBs
NCBI-GeneID:
128085584
NCBI-ProteinID:
XP_052549178
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MSFTSSKNSSYRRMFGGGSRPSSGTRYITSTTRYSLGSALRPSSARYVSASPGGVYATKA
TSVRLRSSMPPMRMHDAVDFTLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQ
QNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLR
EKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQ
AQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNN
DALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQ
DEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRET
NIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcaccagcagcaagaactcctcgtaccgccgcatgttcggcgggggcagccgg
cccagcagcggcacccgctacatcacgtccaccacccgctattcgctgggcagcgccctg
cggcccagcagcgcccgctatgtgtccgcctcgcccggcggcgtgtacgccaccaaggcg
acgtcggtgcggctgcggagcagcatgccgcccatgcggatgcacgacgccgtggacttc
accctggcggacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtagag
ctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcag
cagaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctg
ggcgacctgtacgaggaggagatgcgggagctgcggcggcaggtggaccagctgaccaac
gacaaggcccgcgtcgaggtggagcgcgacaacctggccgacgacatcatgcgcctgcgg
gagaagttgcaggaggagatgctgcagcgggaggaggccgagagcaccctgcagtccttc
cgacaggatgttgacaatgcctctctggcacgccttgatcttgagcgcaaagtagagtcc
ctgcaagaagaaattgtcttcttgaagaagcttcatgatgaggaaatccgggaactgcag
gctcaactccaggaacagcacatccaaatcgatatggatgtttctaagcctgatcttact
gctgccctgcgtgatgtccgtcaacagtatgaaagcgttgctgctaagaatcttcaggaa
gctgaagagtggtacaagtccaaatttgcagatctctccgaagctgctaataggaacaat
gatgccctgcgccaggccaaacaagaagctaatgaataccgcagacagattcagtctctc
acctgtgaagttgatgcccttaaaggaagcaatgaatccctggagcgccagatgcgtgaa
atggaggagaatttcgctgttgaagctgctaactaccaagacactattggccgcctgcag
gatgagattcagaacatgaaggaagaaatggcccgtcatcttcgtgagtaccaggacctg
ctgaatgtaaagatggctcttgatattgagattgctacctacagaaaactgctggaggga
gaagagagcaggattaacatgcctattccaacctttgcttctttgaacctgagagaaacc
aacattgagtctcagccaatggttgacactcactcgaagaggacacttctaattaagacc
gtggaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggag
taa
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