KEGG   Tympanuchus pallidicinctus (lesser prairie-chicken): 128085668
Entry
128085668         CDS       T08967                                 
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
tpai  Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03040  Spliceosome
tpai04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tpai00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128085668 (PRPF19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    128085668 (PRPF19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tpai03041]
    128085668 (PRPF19)
   04121 Ubiquitin system [BR:tpai04121]
    128085668 (PRPF19)
   03400 DNA repair and recombination proteins [BR:tpai03400]
    128085668 (PRPF19)
Enzymes [BR:tpai01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     128085668 (PRPF19)
Spliceosome [BR:tpai03041]
 Complex B
  Other components
   Prp19 complex
    128085668 (PRPF19)
 Complex C
   Prp19-CDC5 complex
    128085668 (PRPF19)
Ubiquitin system [BR:tpai04121]
 Ubiquitin ligases (E3)
  U-box type E3
   128085668 (PRPF19)
DNA repair and recombination proteins [BR:tpai03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    128085668 (PRPF19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_WDHD1_1st Prp19 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta WDR55 Beta-prop_WDR90_POC16_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_Aladin Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_HPS5 NBCH_WD40 U-box Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_IFT122_1st PEP5_VPS11_N WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_Nup120_160 PROPPIN Beta-prop_SPT8 Beta-prop_ACSF4 Beta-prop_VPS8 Cytochrom_D1 Ge1_WD40 Beta-prop_DCAF12 RMC1_N zf-Nse Beta-prop_WDR35_TULP_N DUF1830 ATG16 GP3 Cep57_MT_bd
Other DBs
NCBI-GeneID: 128085668
NCBI-ProteinID: XP_052549340
LinkDB
Position
Unknown
AA seq 504 aa
MALICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSSQPNVSGAGESMELGELAGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVIVFDKSSEQILATLKGHSKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQ
VVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDESSGCALTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggctctcatctgctccatctccaacgaggtccccgagcacccgtgcgtgtcgccggtg
tccaaccacgtgtacgagcggcggctgatcgagaaatacattgcggagaacggcaccgac
cccgtcaacaaccagcccttgtccgaagagcagctcatagacatcaaagttgcccatccc
atccggcccaagccaccatcggccaccagcatcccggccatcctgaaggcgctgcaggat
gagtgggatgctgtcatgctgcacagcttcacgctgcgccagcagctgcagaccacgcgc
caggagctgtcccacgcgctgtaccagcatgatgctgcctgccgtgtcatcgcacggctt
accaaggaggtcactgctgccagagaagctctggccacactgaaaccgcaggctggcctt
atcgtgccacaggcagtgccgtcctcacagcctaatgtgtcgggagctggggagtccatg
gagctgggtgagcttgcaggcatgacccctgagattatccagaagcttcaagacaaggcc
actgtgctgaccacagagcgcaagaagaggggcaaaacagtgccagaggagctggtgaag
ccagaggagctcagcaagtaccggcaggttgcctcgcacgtggggctgcacagtgccagc
attccaggaatcctggccttggacctctgtccttccgacaccaacaagatcctcactggt
ggggctgataaaaatgtcatcgtctttgataagagctcggagcagatcctggcgacactc
aagggccactctaagaaggtcaccagtgttgtgttccacccctcacaggatttggtgttc
tcagcttctcctgatgccaccatccggatctggtctgtgcccaatgcttcctgtgtgcag
gttgtccgtgcccatgagggctccgtgacagggctcagcctgcatgccacgggtgattac
cttctgagctcttctgatgaccagtactgggccttctcagacatccagacgggccgtgtt
ctcaccaaggtgacagatgagagctctggctgcgccctcacctgtgcccaattccaccca
gatgggctcatctttggaacgggaacgatggattctcagatcaagatctgggatctgaag
gaacgcaccaacgtggccaacttcccagggcactcgggccccatcaccagcattgccttc
tctgagaacggctactacctggccacggctgcagacgactcctctgtcaagctctgggac
ttgcgtaaactgaagaacttcaagacgttgcagctggacaataacttcgaggtgaagtct
ctcatctttgaccagagtggcacctacctggcgctgggcggcacagacgtccagatctac
atctgcaagcagtggacagaaatcctccacttcactgagcacagcggcctcaccacaggg
gtggcttttggccaccatgccaagttcatcgcctcgacgggcatggaccgcagcctgaag
ttctacagcctgtag

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