Tympanuchus pallidicinctus (lesser prairie-chicken): 128086125
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Entry
128086125 CDS
T08967
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04140
Autophagy - animal
tpai04148
Efferocytosis
tpai05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128086125 (VPS18)
04148 Efferocytosis
128086125 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128086125 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128086125 (VPS18)
Membrane trafficking [BR:
tpai04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128086125 (VPS18)
Hops complex
128086125 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-RING_16
zf-RING_Vps41
Lact-deh-memb
zf-RING_5
zf-RING_11
zf-ANAPC11
zf-RING_UBOX
zf_RING_Vps8
zf-RING_2
Nup54_57_C
DUF2229
DUF5600
zf-rbx1
DUF1664
KNOX2
Motif
Other DBs
NCBI-GeneID:
128086125
NCBI-ProteinID:
XP_052550350
LinkDB
All DBs
Position
Unknown
AA seq
974 aa
AA seq
DB search
MASILDEYEDSLYRSASVQQSRASVGIPHSGYVNARLEKETPIFNKQRIDFAPPEKINSL
VVSSNQLCMSLGKDTLLRIDLGKPDEPNQVELGRKDEAKVYKMFLDHTGSHLLIALNTSE
CLYLNRSVQKVRALSRWKGHLIESVGWNKFLGTETNTGPILVGTAQGQIYEAEISVSEGS
LFSTNPDQYFRLVYTLEEESGSAPVCCLEIERGIEGKFFIIATTRKRLFQFVGKVPEGAE
QQGFGSIFAMHADHLPSFREFPASFGFSEIAFYTSKLRSNPRSFAWMMGNGVLYGTLDYS
RPDSILSDERVWVYPSDIDATVNKPISIVLTQFHFLLLLPDRVMAVCTLNEQVVFQDLFL
EKFGTLTRMIKDPMVQQIWIHTEKVVFRYHVQRESRDVWKMYMNMNKFDLAKEYCKDRPE
CLDIVLAKEAEHCFQNKRYLDSAKCYALTQNYFEEIALKFIEAKQEEALMEFLIKKLNNL
KHSEKTQTTLLTTWLTELYLNWLGILEGDPSQRNLYLDTREKFRTFLSSPKNKDCLFNNR
ASIYELLASHGDTEHMVYFAVIMQDYERVVAHHCQHDEYDEALNVLSRHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGSRLDARNLIPALVNYSQSASTQQINEAIRYMEFCVYQLEETQ
QAIHNYLLSLYALCRPDSLLSYLEQAGTNPNRIHYDLKYALRLCAEHGHHHACVHIYKVM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
ALLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLLQAVFPNLPAYKQAKLEDLQK
KLAASSQPSKGHHRPKDADTASLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEEMQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcttccattctggatgagtacgaggactccctgtaccgttccgcctccgtgcagcag
agccgcgccagcgtgggcatcccgcactccggatatgtgaatgcacgactggaaaaggaa
acaccaatatttaacaagcaaaggattgattttgctcctccagagaaaattaacagcttg
gtggtctcctctaaccagctctgtatgagccttggcaaagacacccttctcaggattgat
cttgggaagccagatgaacctaatcaagtggagttgggacgcaaagatgaagccaaggtc
tacaagatgtttttggaccacacaggctctcatctcctgattgctttgaacactagtgaa
tgcctttacctgaacagaagtgttcagaaagtacgagcactctcccgctggaaaggccac
ttgattgaaagcgtgggctggaacaaatttcttggtacagagaccaacactgggcctatc
ctggtgggaacagcccaggggcaaatttatgaagctgaaatatctgtcagcgagggaagc
ctcttcagcactaatcctgaccagtacttccgactcgtctacactctggaggaggaatcg
ggatctgcgcctgtctgctgcttggagattgaacgagggatagaagggaaattttttatt
atagcaaccactcgaaagagacttttccagtttgttggcaaagtgcctgaaggtgcagag
cagcaaggcttcggctccatatttgctatgcacgctgaccacttgcccagcttcagagag
tttccagccagctttggattcagtgagatagccttttatacttcaaaactgcgctccaac
ccacgctcctttgcctggatgatgggaaatggtgttttatatggtacgttggattatagc
cgtcccgattcgattctgagtgatgaacgggtctgggtttatccttctgatattgatgca
actgtgaacaagccaatatccattgtgctcacccagttccactttctgttgctgctgcct
gatcgggtgatggctgtatgcacgctgaatgagcaagtggtttttcaagatctgttcttg
gagaagtttggcacgttgacacgcatgatcaaagatcctatggtccagcagatctggatc
cacactgagaaagttgtgttccgctatcatgtccagcgggaatctagagatgtgtggaaa
atgtatatgaatatgaacaaatttgatttagccaaagaatactgtaaagaccgtccagag
tgcctagatattgtgctggcaaaagaagcagaacattgcttccaaaacaagaggtatcta
gacagtgccaagtgttatgcactgacccagaactattttgaggaaattgcccttaagttc
attgaagccaagcaagaagaggccctgatggagtttctaattaagaagttaaataaccta
aagcattctgagaagacacagaccactctgctgaccacgtggctaacagagctgtatctg
aactggctaggtatactggaaggagatccctcacagcggaatctctatttggatacccgg
gagaagtttcgcaccttcctgagcagcccgaagaacaaagactgtttatttaataaccgg
gcatctatttatgagcttttggcaagccatggggacacagagcacatggtctattttgca
gtcatcatgcaggactatgagcgagtagtagctcaccactgccagcacgatgagtacgat
gaagctctaaatgtgctgtccaggcacagagatgagaagctgttctacaagttctctccg
gtcctcatccagcatattcccaagaaagtggttgatgcttggatttctatgggctccaga
ctggatgccaggaaccttattccagctcttgttaactatagccagagtgccagtactcag
cagatcaatgaagccattagatacatggagttctgtgtatatcagttggaggaaacccag
caagctattcacaactacctgctgtctctctatgctttgtgtcggccagattcattgctg
tcatacctggaacaagcaggaaccaacccaaacagaatccactatgacctgaagtatgca
ctgcgcctatgtgcagagcatgggcaccatcatgcatgtgtccatatttataaagtgatg
gaattatatgaggaagctgtggatcttgcgttacaggtggatgttgatcttgccaagtcc
tgtgcagatctccctgaagatgatgaggaactccggaagaagctctggttgaagattgct
cgccatgttgttcaggaagagaaggatgtcaagaaggcaatggcctgcctctccagctgt
gccctgctgaagattgaagatgtcctgccattttttccagactttgtcactattgaccat
ttcaaggaggctatctgtaactccctggaggactacaacaagcacattgaggagctgaag
agggagatggaggaagccacgcagagtgccaagagaatccgagaggacatccaggaaatg
agaaataagtatggctctgttgagcctcaggaaaaatgtgctgcttgtgactttcctctt
ctaaaccgcccattttaccttttcctttgtggccacatgtttcattatgactgtcttctt
caagcagtttttccaaaccttcctgcctataagcaggcaaagctggaagatcttcagaag
aagctggcagctagcagtcagccttccaagggccaccatcgtcccaaggatgcagacact
gctagtctggggaaggggcagcagagccgagaacagatcaaagctgacattgatgatatt
gtggcagctgaatgtgtgtactgtggtgagctgatgatccgctccattgacaaacctttt
attgatcctcagaagtacgaagaggagatgcaaagctggctgtag
DBGET
integrated database retrieval system
